HHsearch alignment for GI: 254781019 and conserved domain: PRK08304
>PRK08304 stage V sporulation protein AD; Validated.
Probab=98.07 E-value=0.00039 Score=44.74 Aligned_cols=237 Identities=18% Similarity=0.139 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999997279--5786899994578875460058888632026877358984142035888998789999739
Q gi|254781019|r 51 IVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKS 128 (396)
Q Consensus 51 ~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg 128 (396)
T Consensus 56 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLln---Q~i~s~f~ar~l~I----Pf~GlyGACST~~Esl~laa~~vdgg 128 (336)
T PRK08304 56 ESKLMSDAIQQALQKANLKESDIDYLLAGDLLN---QTISANFVARELGI----PFLGLYGACSTMMESLALASMLIDGG 128 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECHHHH---HHHHHHHHHHHCCC----CEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999997499977873897222455---46776677986599----80102567788999999999998266
Q ss_pred CCCEEEEEECCCC-C--CCCCCCCCC------C-----CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9976999503320-1--458887533------4-----783024688426876303531000156786511275887542
Q gi|254781019|r 129 PERKVLIVASDVA-R--YDLGSSGEP------T-----QGCGAVAILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTA 194 (396)
Q Consensus 129 ~~~~aLVV~sD~~-~--~~~~~~~~~------t-----~GaGA~Allv~~~~~~~~~~~~~~~~~~~~~df~rp~~~~~~ 194 (396)
T Consensus 129 ~A~~vla~tSSH~~tAErQFR~P~EyG~Qrp~tAqwTVTGaGa~--il~~~~~~p~It~~TiG---kVvD~Gi---~D~~ 200 (336)
T PRK08304 129 FADRVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAV--LLSKEGSGPKITYATIG---KVIDYGI---KDPL 200 (336)
T ss_pred CHHHHHEECCCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEE--EEECCCCCCEEEEEEEE---EEEECCC---CCCC
T ss_conf 36453100233420366551580320677998651788751799--98138999779898678---8876488---8843
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHH-------HHHHHHHHHH
Q ss_conf 356601698999999999999999629882110123311454057888886411024544100-------1345554333
Q gi|254781019|r 195 LVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSV-------AEIEKAIGIT 267 (396)
Q Consensus 195 ~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~~~~~~~~l~~~~~~~~~~-------~~~e~~~~~~ 267 (396)
T Consensus 201 nM-G----aAMAPAA~dTI~~hf~Dtg~~p~dYDlIvTG-DLg~vG~~i~~~Ll~e~g~~i~~~~~DCG~~iyd~e~Qdv 274 (336)
T PRK08304 201 DM-G----AAMAPAAADTIKQHFEDTGRTPEDYDLIVTG-DLGAVGREIAKELLKEEGYDISDNYNDCGVMIYDSEQQDV 274 (336)
T ss_pred CC-H----HHHHHHHHHHHHHHHHHHCCCHHHCCEEEEC-CHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCC
T ss_conf 03-5----5553789999999999809990023489966-4588789999999998097855522756768763777765
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCE
Q ss_conf 4445323854323389999999971574369888999840798303
Q gi|254781019|r 268 TLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCVA 313 (396)
Q Consensus 268 ~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~a 313 (396)
T Consensus 275 -----~aGGSGcgCSAvV~~g~il~~m~~g~~krvL~vaTGALlSp 315 (336)
T PRK08304 275 -----FAGGSGCACSAVVTYGYLYKELQKGKLKRVLVVATGALLSP 315 (336)
T ss_pred -----CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCC
T ss_conf -----68876544478998999899986487317999974031382