HHsearch alignment for GI: 254781019 and conserved domain: cd00827
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=100.00 E-value=0 Score=366.50 Aligned_cols=300 Identities=37% Similarity=0.480 Sum_probs=237.6
Q ss_pred CCEEEEEEEECCCEEECHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CHHHCCEEEEECC
Q ss_conf 62066888734890455999998709998797630383246655998599999999999999727--9578689999457
Q gi|254781019|r 2 AIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPIMQNQ--DKNLIDTLFFATE 79 (396)
Q Consensus 2 ~vGI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~~lGi~~r~v~~~~Ed~~tmA~~Aa~~~L~~~--~~~~Id~li~~T~ 79 (396)
T Consensus 1 ~v~I~~~g~y~P~~~v~~~~~~~~~~~~--~~~~~~Gi~~r~~a~~~e~~~~ma~~Aa~~aL~~a~~~~~~Idlli~~s~ 78 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE 78 (324)
T ss_pred CCCEEEEEEECCCCEECHHHHHHHHCCH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC
T ss_conf 9368799997899479599999884952--76502470389967999999999999999999984989889979999325
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCCCCCCCCCE
Q ss_conf 887546005888863202687735898414203588899878999973999769995033201458--887533478302
Q gi|254781019|r 80 SSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASDVARYDL--GSSGEPTQGCGA 157 (396)
Q Consensus 80 t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg~~~~aLVV~sD~~~~~~--~~~~~~t~GaGA 157 (396)
T Consensus 79 ~~~~~~p~~a~~i~~~Lgl~-~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~LVv~~e~~s~~~~~~~~~~~~~GDgA 157 (324)
T cd00827 79 SPIDKGKSAATYLAELLGLT-NAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLDEGSALEPTLGDGA 157 (324)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCC
T ss_conf 77867974999999985899-97188601422047999999998875487651478740110124677987664457722
Q ss_pred EEEEECCCCCCCEEEECCCCCCCC---------CCCCCCCCCCCCE---E----ECCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 468842687630353100015678---------6511275887542---3----56601698999999999999999629
Q gi|254781019|r 158 VAILISSQTSILEIEDITGIYTND---------CMDFWRPNYRRTA---L----VDGKYSTKIYLQSLEAVWHDYQKNKG 221 (396)
Q Consensus 158 ~Allv~~~~~~~~~~~~~~~~~~~---------~~df~rp~~~~~~---~----~dg~~~~~~y~~~~~~a~~~~l~~~g 221 (396)
T Consensus 158 aA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (324)
T cd00827 158 AAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRAG 237 (324)
T ss_pred EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89998227865555403677501566544444567888777543210022224441789999999999999999999849
Q ss_pred CCHHHCCEEEECCCCCH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 88211012331145405-78888864110245441001345554333-44453238543233899999999715743698
Q gi|254781019|r 222 HDFNDFQYFCYHQPFTR-MAEKAHIRLSKIVHQNLSVAEIEKAIGIT-TLYNRLIGNSYTASLYIALISLLDHSSENLAG 299 (396)
Q Consensus 222 ~~~~did~~v~H~p~~k-~~~~~~~~l~~~~~~~~~~~~~e~~~~~~-~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G 299 (396)
T Consensus 238 ~~-~~~~~~~~hq~~~~~i~~~~~~~l~~~~~~----------~~~~~~~~~~~~Gn~~sasi~~~L~~~l~-~g~l~~G 305 (324)
T cd00827 238 LS-EDIDYFVPHQPNGKKILEAVAKKLGGPPEK----------ASQTRWILLRRVGNMYAASILLGLASLLE-SGKLKAG 305 (324)
T ss_pred CC-HHHHHEEECCCCHHHHHHHHHHHCCCCHHH----------CCCCHHHHCCCCCCHHHHHHHHHHHHHHH-CCCCCCC
T ss_conf 97-544124325763789999999983996565----------13516465168414489899999999997-2999984
Q ss_pred CEEEEEEECCCCCEEEE
Q ss_conf 88999840798303778
Q gi|254781019|r 300 KRVGFFSYGSGCVAEFF 316 (396)
Q Consensus 300 ~rIll~syGsG~~a~~f 316 (396)
T Consensus 306 d~vll~~~G~G~s~~~~ 322 (324)
T cd00827 306 DRVLLFSYGSGFTAEAF 322 (324)
T ss_pred CEEEEEEECHHHHHHHE
T ss_conf 99999999068315511