HHsearch alignment for GI: 254781019 and conserved domain: pfam00109
>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=97.92 E-value=0.00013 Score=47.66 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHCC--HHHCC-----EEEEECCCCCC----------------------CCH-HHHHHHHHHHCCCCCC
Q ss_conf 999999999997279--57868-----99994578875----------------------460-0588886320268773
Q gi|254781019|r 53 TMAAAAALPIMQNQD--KNLID-----TLFFATESSVD----------------------QSK-SAAIWLHKLLGLNSSC 102 (396)
Q Consensus 53 tmA~~Aa~~~L~~~~--~~~Id-----~li~~T~t~~~----------------------~~~-~~a~~v~~~Lgl~~~~ 102 (396)
T Consensus 78 ~~~~~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~Gp- 156 (243)
T pfam00109 78 RLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRGP- 156 (243)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC-
T ss_conf 9999999999998499846727887289999864764899997630367433464110564511788899867415798-
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 589841420358889987899997399976999503320
Q gi|254781019|r 103 RVVELKQACYSATCALHMACALVAKSPERKVLIVASDVA 141 (396)
Q Consensus 103 ~~~Di~~aC~g~~~AL~~A~~~i~sg~~~~aLVV~sD~~ 141 (396)
T Consensus 157 -~~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~ 194 (243)
T pfam00109 157 -SVTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAP 194 (243)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf -64665520789999999997533698387999784155