HHsearch alignment for GI: 254781019 and conserved domain: pfam01154
>pfam01154 HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal.
Probab=100.00 E-value=0 Score=315.52 Aligned_cols=165 Identities=31% Similarity=0.501 Sum_probs=157.1
Q ss_pred CCEEEEEEEECCCEEECHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CHHHCCEEEEECC
Q ss_conf 62066888734890455999998709998797630383246655998599999999999999727--9578689999457
Q gi|254781019|r 2 AIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPIMQNQ--DKNLIDTLFFATE 79 (396)
Q Consensus 2 ~vGI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~~lGi~~r~v~~~~Ed~~tmA~~Aa~~~L~~~--~~~~Id~li~~T~ 79 (396)
T Consensus 1 ~VGI~~i~~Y~P~~~v~~~~La~~rg~d~~K~~~GlG~~~mav~~~~ED~vTmAanAa~~ll~~~~i~~~~Ig~l~vgTE 80 (171)
T pfam01154 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKLMERNNLDYDCIGRLEVGTE 80 (171)
T ss_pred CCCEEEEEEECCHHEECHHHHHHHHCCCHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCC
T ss_conf 98987898847711135999999959898885204586354279997279999999999999873999888407996377
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 88754600588886320268773--589841420358889987899997399--97699950332014588875334783
Q gi|254781019|r 80 SSVDQSKSAAIWLHKLLGLNSSC--RVVELKQACYSATCALHMACALVAKSP--ERKVLIVASDVARYDLGSSGEPTQGC 155 (396)
Q Consensus 80 t~~~~~~~~a~~v~~~Lgl~~~~--~~~Di~~aC~g~~~AL~~A~~~i~sg~--~~~aLVV~sD~~~~~~~~~~~~t~Ga 155 (396)
T Consensus 81 S~iD~SKs~~t~l~~ll~~~~~~~~~~~e~k~ACyggTaAL~~a~~~v~s~~~~~k~alVV~sDiA~y~~~~~-e~TqGA 159 (171)
T pfam01154 81 TIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNALNWIESSSWDGRYALVVAGDIAIYAKGNA-RPTGGA 159 (171)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC-CCCCCC
T ss_conf 6456655689999998376578874033300106989999999999998288789639999841001379998-756770
Q ss_pred CEEEEEECCCCC
Q ss_conf 024688426876
Q gi|254781019|r 156 GAVAILISSQTS 167 (396)
Q Consensus 156 GA~Allv~~~~~ 167 (396)
T Consensus 160 GAVAmLv~~nap 171 (171)
T pfam01154 160 GAVAMLIGPNAP 171 (171)
T ss_pred CEEEEEECCCCC
T ss_conf 358999758999