HHsearch alignment for GI: 254781019 and conserved domain: pfam07451
>pfam07451 SpoVAD Stage V sporulation protein AD (SpoVAD). This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation.
Probab=98.04 E-value=0.00075 Score=42.95 Aligned_cols=236 Identities=19% Similarity=0.144 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999997279--5786899994578875460058888632026877358984142035888998789999739
Q gi|254781019|r 51 IVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKS 128 (396)
Q Consensus 51 ~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg 128 (396)
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLln---Q~i~ssf~ar~l~i----Pf~GlyGACST~~E~l~laa~~vd~g 123 (329)
T pfam07451 51 ESKMLEEAVKLALKKAGLKKDDIDYLLAGDLLN---QIISSSFAARTLGI----PFLGLYGACSTMMESLALAAMLVDGG 123 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECHHHH---HHHHHHHHHHHCCC----CEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999987499988864895012443---25777788986399----81211356677899999999998466
Q ss_pred CCCEEEEEECCCCC---CCCCCCCCC------C-----CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99769995033201---458887533------4-----783024688426876303531000156786511275887542
Q gi|254781019|r 129 PERKVLIVASDVAR---YDLGSSGEP------T-----QGCGAVAILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTA 194 (396)
Q Consensus 129 ~~~~aLVV~sD~~~---~~~~~~~~~------t-----~GaGA~Allv~~~~~~~~~~~~~~~~~~~~~df~rp~~~~~~ 194 (396)
T Consensus 124 ~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~--il~~~~~~p~It~~TiG---kVvD~Gi---~Dp~ 195 (329)
T pfam07451 124 FADYVLAATSSHFASAERQFRFPTEYGGQRPPTAQWTVTGAGAV--LLGKEGDGPRITSATIG---KVVDYGI---KDPN 195 (329)
T ss_pred CHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEE--EEECCCCCCEEEEEEEE---EEEECCC---CCCC
T ss_conf 54341343144520366542682211677998663788751899--99438998779898778---8876588---8843
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHH-------HHHHHHHHHH
Q ss_conf 356601698999999999999999629882110123311454057888886411024544100-------1345554333
Q gi|254781019|r 195 LVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSV-------AEIEKAIGIT 267 (396)
Q Consensus 195 ~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~~~~~~~~l~~~~~~~~~~-------~~~e~~~~~~ 267 (396)
T Consensus 196 nM-G----aAMAPAA~dTI~~hf~D~g~~p~dYDlIvTG-DLG~vG~~i~~~Ll~~~g~~i~~~~~DCG~~Iyd~~~Q~v 269 (329)
T pfam07451 196 NM-G----AAMAPAAADTIEQHFQDTGRDPSDYDLIVTG-DLGKVGREIAEDLLKEKGYDISENYQDCGLLIYDNEKQDV 269 (329)
T ss_pred CC-H----HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEC-CHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCC
T ss_conf 02-5----5564789999999999709992244479966-4488789999999998198844431766768664787765
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 444532385432338999999997157436988899984079830
Q gi|254781019|r 268 TLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCV 312 (396)
Q Consensus 268 ~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~ 312 (396)
T Consensus 270 -----~aGGSGcgCSAvV~~g~il~~m~~g~~krvL~VaTGALlS 309 (329)
T pfam07451 270 -----HAGGSGCGCSAVVLYGYLLKKMKKGELKRVLFVATGALLS 309 (329)
T ss_pred -----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCC
T ss_conf -----5787643368999999989999658721899997503138