BLAST/PSIBLAST alignment of GI: 254781019 and GI: 54024181 at iteration 1
>gi|54024181|ref|YP_118423.1| putative 3-hydroxy-3-methylglutaryl-CoA synthase [Nocardia farcinica IFM 10152] Length = 403
>gi|54015689|dbj|BAD57059.1| putative 3-hydroxy-3-methylglutaryl-CoA synthase [Nocardia farcinica IFM 10152] Length = 403
 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/385 (50%), Positives = 256/385 (66%), Gaps = 1/385 (0%)

Query: 2   AIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALP 61
           A+GI D+SF TT+  LD  ++A++  +DV KF +GIGQE MSV   DED+VT+AAAAA P
Sbjct: 5   AVGIHDLSFATTHYALDHVLLADRLGVDVDKFRLGIGQETMSVAAADEDVVTLAAAAAAP 64

Query: 62  IMQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMA 121
           +++      I T+  ATES VDQSKSA ++LH L+GL +S RVVELKQACY  T  L  A
Sbjct: 65  VLERHGAEGIRTVLLATESGVDQSKSAGLYLHPLIGLPNSARVVELKQACYGGTAGLQFA 124

Query: 122 CALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTND 181
             L+A+ P ++VL++A+DVA+YDL S GEPTQG  AVA+L+++   I+ IE  +G+Y+ D
Sbjct: 125 AGLIARDPTQRVLVIAADVAKYDLDSPGEPTQGAAAVAMLVTADPGIVAIETPSGLYSAD 184

Query: 182 CMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAE 241
            MDFWRPNYR  ALVDGK S   Y ++ +  W DY++  G D  +F  FCYHQPFTRMA 
Sbjct: 185 IMDFWRPNYRSAALVDGKTSVNAYQKAAQEAWSDYRRRGGRDLGEFAAFCYHQPFTRMAY 244

Query: 242 KAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKR 301
           KAH  L +          IE A+  TT YNR +GNSYTASLY+ L+SLLDH +++L+G+ 
Sbjct: 245 KAHRHLLESQGHRADPDAIESAVAHTTHYNRTVGNSYTASLYLGLMSLLDH-ADDLSGRP 303

Query: 302 VGFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVEG 361
           + F SYGSG VAEFF G+V   YR+    +  +  I +R P+ Y  Y  LH+   P+   
Sbjct: 304 LAFVSYGSGSVAEFFGGVVVPGYRRHLRTETTRAAIATREPLGYDEYRALHEAGTPTDGR 363

Query: 362 NCTIPHTTTGPFRLATIQNHKRIYE 386
              +P  T  PFRLA I  HKRIYE
Sbjct: 364 YHALPAQTRRPFRLAAISGHKRIYE 388