RPSBLAST alignment for GI: 254781019 and conserved domain: TIGR01835

>gnl|CDD|130894 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379
 Score =  488 bits (1257), Expect = e-138
 Identities = 189/383 (49%), Positives = 256/383 (66%), Gaps = 4/383 (1%)

Query: 3   IGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPI 62
           IGI+ ISF+T   YLD++ +AE   +D  KF++GIGQ++M+V   DEDIVTMAA+AA PI
Sbjct: 1   IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60

Query: 63  MQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMAC 122
           +   DK  ID + F TES +DQSK+AA+++H LLGL   CR  ELKQACY AT AL MA 
Sbjct: 61  LDRNDKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAK 120

Query: 123 ALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTNDC 182
             VA SP+RKVL++ASD+A+Y L S GEPTQG GAVA+L+S+   +L I + + +YT+D 
Sbjct: 121 GHVALSPDRKVLVIASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAINEDSVLYTDDI 180

Query: 183 MDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEK 242
           MDFWRPNY  TALVDG+YS + YL + E  W+DY K  G    DF  FC+H PFT+M  K
Sbjct: 181 MDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLSLADFAAFCFHVPFTKMGLK 240

Query: 243 AHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRV 302
           A   + K  +++   + ++ A   + +YNR +GN YT SLY+ L SLL+++ E+  G ++
Sbjct: 241 ALRHILKKNYEDEDES-VQNAYLESIIYNREVGNLYTGSLYLGLASLLENAFEDTTGDKI 299

Query: 303 GFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVEGN 362
           G FSYGSG VAEFFSG +   YR    ++RH  ++ +R  +SY  Y  L ++ +P+    
Sbjct: 300 GLFSYGSGAVAEFFSGTLVAGYRDHLKKERHLALLKNRTNLSYAEYEALFEETLPTDGDQ 359

Query: 363 CTIPHTTTGPFRLATIQNHKRIY 385
              P    G FRLA I +HKRIY
Sbjct: 360 ---PGEDRGFFRLAGINDHKRIY 379