RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme
A synthase [Candidatus Liberibacter asiaticus str. psy62]
(396 letters)
>gnl|CDD|130894 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase,
prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have resulted
from a separate lateral transfer event.
Length = 379
Score = 488 bits (1257), Expect = e-138
Identities = 189/383 (49%), Positives = 256/383 (66%), Gaps = 4/383 (1%)
Query: 3 IGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPI 62
IGI+ ISF+T YLD++ +AE +D KF++GIGQ++M+V DEDIVTMAA+AA PI
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60
Query: 63 MQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMAC 122
+ DK ID + F TES +DQSK+AA+++H LLGL CR ELKQACY AT AL MA
Sbjct: 61 LDRNDKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAK 120
Query: 123 ALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTNDC 182
VA SP+RKVL++ASD+A+Y L S GEPTQG GAVA+L+S+ +L I + + +YT+D
Sbjct: 121 GHVALSPDRKVLVIASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAINEDSVLYTDDI 180
Query: 183 MDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEK 242
MDFWRPNY TALVDG+YS + YL + E W+DY K G DF FC+H PFT+M K
Sbjct: 181 MDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLSLADFAAFCFHVPFTKMGLK 240
Query: 243 AHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRV 302
A + K +++ + ++ A + +YNR +GN YT SLY+ L SLL+++ E+ G ++
Sbjct: 241 ALRHILKKNYEDEDES-VQNAYLESIIYNREVGNLYTGSLYLGLASLLENAFEDTTGDKI 299
Query: 303 GFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVEGN 362
G FSYGSG VAEFFSG + YR ++RH ++ +R +SY Y L ++ +P+
Sbjct: 300 GLFSYGSGAVAEFFSGTLVAGYRDHLKKERHLALLKNRTNLSYAEYEALFEETLPTDGDQ 359
Query: 363 CTIPHTTTGPFRLATIQNHKRIY 385
P G FRLA I +HKRIY
Sbjct: 360 ---PGEDRGFFRLAGINDHKRIY 379
>gnl|CDD|162552 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase,
eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA
synthase is the first step of isopentenyl pyrophosphate
(IPP) biosynthesis via the mevalonate pathway. This
pathway is found mainly in eukaryotes, but also in
archaea and some bacteria. This model is specific for
eukaryotes.
Length = 454
Score = 162 bits (411), Expect = 2e-40
Identities = 119/387 (30%), Positives = 172/387 (44%), Gaps = 58/387 (14%)
Query: 3 IGIEDISFYTTNQYLDLSVIAEKY-RLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALP 61
+GI + Y +QY+D + + EKY + K+ +G+GQ +M EDI ++
Sbjct: 2 VGILALEIYFPSQYVDQAEL-EKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSK 60
Query: 62 IMQ--NQDKNLIDTLFFATESSVDQSKSAAIWLHKLLG--LNSSCRVVELKQACYSATCA 117
+M+ N D N I L TE+ +D+SKS L +L N+ ++ ACY T A
Sbjct: 61 LMERYNIDYNQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 120
Query: 118 LHMACALVAKSP--ERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDIT 175
L A + S R L+VA D+A Y G++ PT G GAVA+LI I+ +
Sbjct: 121 LFNAINWIESSSWDGRYALVVAGDIAVYAKGNA-RPTGGAGAVAMLIGPNAPIVFERGLR 179
Query: 176 GIYTNDCMDFWRPNY-RRTALVDGKYSTKIYLQSL-----------EAVWHDYQKNKGHD 223
G + DF++P+ +VDGK S + YL +L E W ++
Sbjct: 180 GSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFT 239
Query: 224 FNDFQYFCYHQPFTRMAEKAHIRL---------SKIVHQNLSVAE--------------- 259
NDF Y +H P+ ++ +K+ RL S I E
Sbjct: 240 LNDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRD 299
Query: 260 IEKA------------IGITTLYNRLIGNSYTASLYIALISLLDH-SSENLAGKRVGFFS 306
+EKA + L +GN YTASLY L SLL S++ LAGKRVG FS
Sbjct: 300 LEKAFMKASKELFDKKTKPSLLVPNQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMFS 359
Query: 307 YGSGCVAEFFSGIVQKNYRKKSHQKRH 333
YGSG A FS V ++ S +
Sbjct: 360 YGSGLAASMFSLRVSQDASPGSALDKL 386
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase.
Length = 459
Score = 156 bits (395), Expect = 1e-38
Identities = 108/365 (29%), Positives = 168/365 (46%), Gaps = 52/365 (14%)
Query: 3 IGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPI 62
+GI + Y + + + K+ +G+GQ+ M+ ED+++M+ +
Sbjct: 5 VGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSL 64
Query: 63 MQ--NQDKNLIDTLFFATESSVDQSKSAAIWLHKLL--GLNSSCRVVELKQACYSATCAL 118
++ N D I L +E+ +D+SKS +L +L N+ V+ ACY T AL
Sbjct: 65 LEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAAL 124
Query: 119 HMACALVAKSPE---RKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDIT 175
+ C +S R L+VA+D A Y G + PT G GAVA+L+ I+
Sbjct: 125 -LNCVNWVESSSWDGRYGLVVAADSAVYAEGPA-RPTGGAGAVAMLVGPNAPIVFESKYR 182
Query: 176 GIYTNDCMDFWRPNYR-RTALVDGKYSTKIYLQSLEAVWH----DYQKNKGHDFN--DFQ 228
G + DF++P+ +VDGK S YL +L++ + Y+K +G F+ D
Sbjct: 183 GSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDAD 242
Query: 229 YFCYHQPFTRMAEKAHIRL--------SKIVHQ----------NLSVAE------IEKA- 263
YF +H P+ ++ +K+ RL + V + LS E +EK
Sbjct: 243 YFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKVS 302
Query: 264 -----------IGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCV 312
+ TTL + +GN YTASLY AL SL+ + LAGKR+ FSYGSG
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGLT 362
Query: 313 AEFFS 317
A FS
Sbjct: 363 ATMFS 367
>gnl|CDD|179804 PRK04262, PRK04262, hypothetical protein; Provisional.
Length = 347
Score = 110 bits (277), Expect = 7e-25
Identities = 89/342 (26%), Positives = 133/342 (38%), Gaps = 69/342 (20%)
Query: 36 GIGQERMSVLNPDEDIVTMAAAAALPIMQ--NQDKNLIDTLFFATESSVDQSKSAAIWLH 93
G+G E SV PDED T+A AA ++ D I ++ +ES K A +
Sbjct: 36 GLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHPYAVKPTATIVA 95
Query: 94 KLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASDVARYDLGSSGEPTQ 153
+ LG +L+ AC + T AL A LV + L + +D A+ G + E T
Sbjct: 96 EALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQGAPGDALEYTA 155
Query: 154 GCGAVAILISSQTSILEIEDITGIYTNDCMDFWR----------------PNYRR----- 192
G A +I + I EIE T YT D DFWR P Y +
Sbjct: 156 AAGGAAFIIGKEEVIAEIEA-TYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISA 214
Query: 193 -TALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQP---F-TRMAEKAHIRL 247
L++ K K +D+ Y +HQP F R+A+
Sbjct: 215 AKGLME-KLGLKP--------------------SDYDYAVFHQPNGKFPLRVAKMLGFTK 253
Query: 248 SKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSY 307
++ G+ T Y IGN+Y+ S + L ++LD + G R+ S+
Sbjct: 254 EQV------------KPGLLTPY---IGNTYSGSALLGLAAVLDVAK---PGDRILVVSF 295
Query: 308 GSGCVAEFFSGIVQKN-YRKKSHQKRHQHIINSRIPISYQVY 348
GSG ++ FS V K+ + + + I Y VY
Sbjct: 296 GSGAGSDAFSITVTDAIEEKRDLAPTVEDYLERKKYIDYAVY 337
>gnl|CDD|149555 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A
synthase C terminal.
Length = 282
Score = 97.9 bits (244), Expect = 4e-21
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 51/212 (24%)
Query: 184 DFWRPNY-RRTALVDGKYSTKIYLQSLEAVWHDY---------QKNKGHDFNDFQYFCYH 233
DF++P+ +VDGK S + YL++L++ + +Y +DF Y +H
Sbjct: 17 DFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFH 76
Query: 234 QPFTRMAEKAHIRL----------------------------------SKIVH---QNLS 256
P+ ++ +K+ RL + + LS
Sbjct: 77 SPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLEDSYTDRDLEKAFMQLS 136
Query: 257 VAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDH-SSENLAGKRVGFFSYGSGCVAEF 315
+K + L +GN YTASLY AL SLL H S++ LAGKR+G FSYGSG A
Sbjct: 137 KPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSYGSGLAASL 196
Query: 316 FSGIVQKNYRKKSHQKRHQHIINSRIPISYQV 347
FS V ++ S Q +I + + ++
Sbjct: 197 FSLRVSQD---VSPGSILQKLITKVLDLKNKL 225
>gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase,
putative. Thus, although there is no experimental
evidence supporting this name, the bioinformatics-based
conclusion appears to be sound.
Length = 345
Score = 88.8 bits (220), Expect = 2e-18
Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 19/339 (5%)
Query: 22 IAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPIMQNQ--DKNLIDTLFFATE 79
IA + D G+ E +V DED T+ AA ++ D I ++ +E
Sbjct: 21 IARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSE 80
Query: 80 SSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASD 139
S K A + + +G +L+ AC + T + LVA + L + +D
Sbjct: 81 SHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGAD 140
Query: 140 VARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTALVDGK 199
A+ G + E T G G A +I + ++ E T YT D DFWR G+
Sbjct: 141 TAQGAPGDALEYTAGAGGAAYIIGEKNTVAYFEG-TYSYTTDTPDFWRREGEPYPRHGGR 199
Query: 200 YSTK-IYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSVA 258
++ + Y + + G DF Y +HQP K ++ +++ L
Sbjct: 200 FTGEPAYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQP----NGKFYLVAARM----LGFP 251
Query: 259 EIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCVAEFFSG 318
+ + G+ T IGN+Y+ + + L ++LD + G R+ SYGSG ++ FS
Sbjct: 252 KEQVKPGLLTPR---IGNTYSGATPVGLSAVLDIAE---PGDRILAVSYGSGAGSDAFSI 305
Query: 319 IVQKNY-RKKSHQKRHQHIINSRIPISYQVYCDLHQDII 356
+VQ K+ + I + I Y +Y + I
Sbjct: 306 VVQDAIEEKRDLAPKVADYIKRKKYIDYALYAKFRRKYI 344
>gnl|CDD|183809 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 44.1 bits (105), Expect = 7e-05
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 36 GIGQERMSVLNPDEDIVTMAAAAALPIMQNQDKNL--IDTLFFATESSVDQSKSAAIWLH 93
GI + R++ + +E +A AA + + ID + AT + S A +
Sbjct: 40 GIKERRIA--HVEEYTSDLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQ 97
Query: 94 KLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASDV 140
LG+ + ++ AC L A L+ +KVL++ ++
Sbjct: 98 ARLGIPN-AAAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAER 143
>gnl|CDD|171793 PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 353
Score = 43.4 bits (102), Expect = 1e-04
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 37 IGQERMSVLNPDEDIVTMAAAAALPIMQ--NQDKNLIDTLFFATESSVDQSKSAAIWLHK 94
IG + + + + + AA ++Q N DKN +D L T+S S A +LH+
Sbjct: 46 IGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQ 105
Query: 95 LLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASD 139
LL L+S +L QAC L +A +L+ +S K+L++ D
Sbjct: 106 LLNLSSKTIAFDLGQACAGYLYGLFVAHSLI-QSGLGKILLICGD 149
>gnl|CDD|178716 PLN03172, PLN03172, chalcone synthase family protein; Provisional.
Length = 393
Score = 42.7 bits (100), Expect = 1e-04
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 57 AAALPIMQ-NQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSC-RVVELKQACYSA 114
AAA I + Q K+ I L F T S VD A L KLLGL S R + +Q C++
Sbjct: 109 AAAKAIKEWGQPKSKITHLVFCTTSGVDMP-GADYQLTKLLGLKPSVKRFMMYQQGCFAG 167
Query: 115 TCALHMACALVAKSPERKVLIVASDVARYDL-GSS--------GEPTQGCGAVAILISS 164
L +A L + +VL+V S++ G S G+ G GA A++I +
Sbjct: 168 GTVLRLAKDLAENNAGSRVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGA 226
>gnl|CDD|178717 PLN03173, PLN03173, chalcone synthase; Provisional.
Length = 391
Score = 42.8 bits (100), Expect = 2e-04
Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 57 AAALPIMQ-NQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSC-RVVELKQACYSA 114
AAA I + Q K+ I L F T S VD A L KLLGL SS R + +Q C++
Sbjct: 109 AAAKAIKEWGQPKSKITHLVFCTTSGVDMP-GADYQLTKLLGLRSSVKRFMMYQQGCFAG 167
Query: 115 TCALHMACALVAKSPERKVLIVASDVARYDL-GSS--------GEPTQGCGAVAILISS 164
L +A L + +VL+V S++ G S G+ G GA AI+I S
Sbjct: 168 GTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGS 226
>gnl|CDD|162020 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
Active site residues include Cys112, His244 and Asn274
of E. coli FabH. Cys-112 is the site of acyl group
attachment.
Length = 318
Score = 38.5 bits (90), Expect = 0.003
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 36 GIGQERMSVLNPDEDIVTMAAAAALPIMQNQ--DKNLIDTLFFATESSVDQSKSAAIWLH 93
GI + R++ DE TM AA ++N K+ ID + AT + SAA +
Sbjct: 38 GIKERRIA--ADDETSSTMGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQ 95
Query: 94 KLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASDV 140
LG+ +L AC AL +A + + VL+V ++
Sbjct: 96 AYLGIKGIP-AFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEK 141
>gnl|CDD|178712 PLN03168, PLN03168, chalcone synthase; Provisional.
Length = 389
Score = 35.8 bits (82), Expect = 0.022
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 45 LNPDEDIVT-----MAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLG 97
LN DIV +AA AA ++ K+ I + FAT S V+ A L KLLG
Sbjct: 90 LNVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMP-GADHALAKLLG 148
Query: 98 LNSSCRVVELKQ-ACYSATCALHMACALVAKSPERKVLIVASDV 140
L + + V + Q C+ L +A L + +VL VAS+V
Sbjct: 149 LKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEV 192
>gnl|CDD|180881 PRK07204, PRK07204, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 329
Score = 33.7 bits (77), Expect = 0.094
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 48 DEDIVTMAAAAALPIMQNQDKNL--IDTLFFATESSVDQSKSAAIWLHKLLGL-NSSCRV 104
E M A AA +++ L ID + A+ + A + + LGL +S
Sbjct: 49 GETSSYMGAEAAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLGLQHSGIPC 108
Query: 105 VELKQACYSATCALHMACALVAKSPERKVLIVASDVARYDLGSSGEPTQ---GCGAVAIL 161
++ C S AL + ++VLI++S+++ L + G GA A++
Sbjct: 109 FDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGLNWGQNESCILFGDGAAAVV 168
Query: 162 ISSQT 166
I+
Sbjct: 169 ITKGD 173
>gnl|CDD|181792 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 32.0 bits (74), Expect = 0.31
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 35 VGIGQERMSVLNPDEDIVTMAAAAALPIMQ--NQDKNLIDTLFFATESSVDQSKSAAIWL 92
GI + R++ PDE +A AA ++ D ID + AT + S A +
Sbjct: 38 TGIKERRIA--APDETTSDLATEAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLV 95
Query: 93 HKLLGLNSSCRVVELKQACY--SATC-----ALHMACALVAKSPERKVLIVASDV 140
LG ++ A + SA C AL A + + VL++ ++
Sbjct: 96 QARLGAKNA--------AAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEK 142
>gnl|CDD|117122 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 30.2 bits (69), Expect = 0.87
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 106 ELKQACYSATCALHMACALVAKSPERKVLIVASDVA 141
++ AC AL A AL+ + VL+V ++
Sbjct: 2 DINAACSGFVYALSTAAALIRSGRAKNVLVVGAETL 37
>gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 372
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 110 ACYSATCALHMACALVAKSPERKVLIV 136
AC SAT + A + R+VL+V
Sbjct: 154 ACSSATFGIQTAANAIRSGSARRVLVV 180
>gnl|CDD|178715 PLN03171, PLN03171, chalcone synthase-like protein; Provisional.
Length = 399
Score = 28.4 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 95 LLGLNSSCRVVELK-QACYSATCALHMACALVAKSPERKVLIVASDVARYDLGSSGEPTQ 153
LLGL S R L C++ AL +A L + +VL+VA+++ P +
Sbjct: 153 LLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLLFNG---PDE 209
Query: 154 GC 155
GC
Sbjct: 210 GC 211
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 28.3 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 29 DVAKFYVGIGQERMSVLN----------PDEDIVTMAAAAALPIMQ 64
DV YV IGQ+ +V + V +A A+ P +Q
Sbjct: 190 DVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQ 235
>gnl|CDD|163263 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
Members of this family are bacterial domains that
include a region related to the von Willebrand factor
type A (VWFA) domain (pfam00092). These domains are
restricted to, and have undergone a large paralogous
family expansion in, the Acidobacteria, including
Solibacter usitatus and Acidobacterium capsulatum ATCC
51196.
Length = 296
Score = 28.0 bits (63), Expect = 4.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 117 ALHMACALVAKSPERKVLIVASD 139
AL +A P RK LIV SD
Sbjct: 151 ALEQLANALAGIPGRKALIVISD 173
>gnl|CDD|180894 PRK07226, PRK07226, fructose-bisphosphate aldolase; Provisional.
Length = 267
Score = 27.8 bits (63), Expect = 4.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 246 RLSKIVHQNLSVAEIEKAIG 265
+S +VH+ SV E K +G
Sbjct: 246 AISAVVHEGASVEEALKILG 265
>gnl|CDD|178713 PLN03169, PLN03169, chalcone synthase family protein; Provisional.
Length = 391
Score = 27.7 bits (62), Expect = 6.0
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 40 ERMSVLNPDEDIVTMAAAAALPIMQNQDKNLID-TLFFATESSVDQSKSAAIWLHKLLGL 98
+R+ + N E + MA A+L ++ + + D T SS + ++L K LGL
Sbjct: 97 QRLDIAN--EAVTQMAVEASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLGL 154
Query: 99 NSSC-RVVELKQACYSATCALHMACALVAKSPERKVLIVASD----------VAR-YDLG 146
+ RV+ C L +A + +P +VL+ S+ R YDL
Sbjct: 155 SPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETTILGFRPPSPDRPYDL- 213
Query: 147 SSGEPTQGCGAVAILISS 164
G G GA A++I +
Sbjct: 214 -VGAALFGDGAAAVIIGA 230
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.134 0.399
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,330,637
Number of extensions: 393697
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 26
Length of query: 396
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 301
Effective length of database: 3,941,713
Effective search space: 1186455613
Effective search space used: 1186455613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)