HHsearch alignment for GI: 254781020 and conserved domain: COG0352
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism].
Probab=96.73 E-value=0.037 Score=31.11 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=71.0
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
T Consensus 94 ~~~ar~~~~~~~iI-G~S~-h~~eea~~A~~~g~DYv~~GpifpT~tK~---------~-------~~~~G~~~l~~~~~ 155 (211)
T COG0352 94 LAEARELLGPGLII-GLST-HDLEEALEAEELGADYVGLGPIFPTSTKP---------D-------APPLGLEGLREIRE 155 (211)
T ss_pred HHHHHHHCCCCCEE-EEEC-CCHHHHHHHHHCCCCEEEECCCCCCCCCC---------C-------CCCCCHHHHHHHHH
T ss_conf 58899741999789-8304-99999999876399999988867889998---------8-------77467899999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22898799729888889999999838885233479999841466899999999999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRK 310 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~ 310 (337)
T Consensus 156 ~-~~iP~vAIGGi~-~~nv~~v~~~Ga~gVAvvsai~~a-~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 156 L-VNIPVVAIGGIN-LENVPEVLEAGADGVAVVSAITSA-ADPAAAAKALRNALED 208 (211)
T ss_pred H-CCCCEEEECCCC-HHHHHHHHHHCCCEEEEHHHHHCC-CCHHHHHHHHHHHHHH
T ss_conf 2-799989984889-999999998298769726686607-9889999999999874