HHsearch alignment for GI: 254781020 and conserved domain: PRK05286
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed.
Probab=99.80 E-value=1.6e-17 Score=121.58 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=144.5
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH-------------------
Q ss_conf 98101746299898962568685012663343000256999999998099066-0520221-------------------
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM------------------- 98 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~------------------- 98 (337)
T Consensus 38 ~~~~~~~L~~~i~Gl~f~nPiGLAA--G-fD---Kn~--e~~~~l~~lGFGfvEvGTVT~~pq~GNpkPR~fRl~~~~al 109 (336)
T PRK05286 38 LRYKDPRLPVTVMGLTFPNPVGLAA--G-FD---KNG--EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEAL 109 (336)
T ss_pred HCCCCCCCCEEECCEECCCCCEECC--C-CC---CCC--CCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEE
T ss_conf 1589866676888854699675556--7-89---997--10372665686669970516998799999717981377637
Q ss_pred ----HCCHHHHHHH--HHHHHCC-CHHHHHCCCCCCCC-CCCCHHHHHHHHHHH--CCCEEEECCCCHHHHHHHCCCCCH
Q ss_conf ----1286688899--9998664-01232202752123-679989999877650--898576253203566520688524
Q gi|254781020|r 99 ----FSDHNAIKSF--ELRQYAP-HTVLISNLGAVQLN-YDFGVQKAHQAVHVL--GADGLFLHLNPLQEIIQPNGNTNF 168 (337)
Q Consensus 99 ----~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 168 (337)
T Consensus 110 iNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~aDy~~INiSsPNT~glr~-lq~~ 188 (336)
T PRK05286 110 INRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPYADYFTVNISSPNTPGLRD-LQAG 188 (336)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCH
T ss_conf 850577986899999999850567886589976237884166899999999998263778999756899865200-0466
Q ss_pred HHHHHHHHHHHHHC-----CCCEEEEECCCCCCH---HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 30799999999873-----997178504786688---9999999769979994588886510012310234432324431
Q gi|254781020|r 169 ADLSSKIALLSSAM-----DVPLLLKEVGCGLSS---MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240 (337)
Q Consensus 169 ~~~~~~i~~l~~~~-----~~pii~k~v~~~~~~---~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~ 240 (337)
T Consensus 189 ~~L~~ll~~v~~~~~~~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~idGii~tNT---t~~r-~~l~~~~~~~~GGLSG 264 (336)
T PRK05286 189 EALDELLAALKEAQAELGKYVPLLLKIAPDLSDEELDDIADLALEHGIDGIIATNT---TLDR-SGLEGPNAEEAGGLSG 264 (336)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCCC-CCCCCCCCCCCCCCCC
T ss_conf 99999999999999843788864883288888789999999999819868999588---6766-4456655566687464
Q ss_pred CCCCHH--HHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 063468--89999985-22898799729888889999999838885233479999841466899999999999999999
Q gi|254781020|r 241 WGIPTP--LSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 241 ~gi~~~--~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
T Consensus 265 ~pl~~~s~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgliy---~GP~----lv~~I~~~L~~lL 336 (336)
T PRK05286 265 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY---EGPG----LVKEIVRGLARLL 336 (336)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHH----HHHHHHHHHHHHC
T ss_conf 0678999999999999739997099989989999999999869968874167872---1907----9999999999759