HHsearch alignment for GI: 254781020 and conserved domain: PRK10415

>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=99.63  E-value=1.4e-13  Score=98.41  Aligned_cols=248  Identities=15%  Similarity=0.050  Sum_probs=145.0

Q ss_pred             EECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf             989896256868501266334300025699999999809906605202211--286688899999866401232202752
Q gi|254781020|r   49 EFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAV  126 (337)
Q Consensus        49 ~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (337)
T Consensus         2 ~ig~~~~~~~l~lAPMagvtd~-------~FR~l~~~~Ga~l~~TEmv~a~~~~~~~~~~~~~~--~~~~~~~~---~~v   69 (321)
T PRK10415          2 RIGQYQLRNRLIAAPMAGITDR-------PFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--VHVDEPGI---RTV   69 (321)
T ss_pred             CCCCEECCCCEEECCCCCCCCH-------HHHHHHHHHCCCEEEECCEEECHHHHCCHHHHHHH--CCCCCCCC---CEE
T ss_conf             3798844898897357899489-------99999999883999987587127773384889863--04678898---059


Q ss_pred             CCCCCCCHH---HHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEEC-CC---C
Q ss_conf             123679989---9998776508985762532035665206885-----2430799999999873997178504-78---6
Q gi|254781020|r  127 QLNYDFGVQ---KAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEV-GC---G  194 (337)
Q Consensus       127 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v-~~---~  194 (337)
T Consensus        70 Ql~G-~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~  148 (321)
T PRK10415         70 QIAG-SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH  148 (321)
T ss_pred             EECC-CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf             9726-999999999998876499989431899989970798365063398999999999973448746999846888522


Q ss_pred             -CCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf             -6889999999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r  195 -LSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI  273 (337)
Q Consensus       195 -~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv  273 (337)
T Consensus       149 ~~~~~~~~~~e~aG~~~itvHgRT~---------~q~y~---------g~adw~~i~~vk~~-~~iPvi~NGDI~~~~da  209 (321)
T PRK10415        149 RNCEEIAQLAEDCGIQALTIHGRTR---------ACLFN---------GEAEYDSIRAVKQK-VSIPVIANGDITDPLKA  209 (321)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEHHHH---------HHHHC---------CCCCHHHHHHHHHC-CCCCEEECCCCCCHHHH
T ss_conf             4399999999856988999972213---------44316---------99877999999854-79978965891999999


Q ss_pred             HHHHH-HCCCEEHHHHHHHH-----H-----HCCC----HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHH
Q ss_conf             99998-38885233479999-----8-----4146----689999999999999999998089-8578961
Q gi|254781020|r  274 LKSII-LGASLGGLASPFLK-----P-----AMDS----SDAVVAAIESLRKEFIVSMFLLGT-KRVQELY  328 (337)
Q Consensus       274 ~kAla-lGAdaV~iGr~~l~-----~-----~~~G----~~gv~~~l~~l~~el~~~m~~~G~-~~i~el~  328 (337)
T Consensus       210 ~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g~~~~~~~~~e~~~~~~~h~~~~~~~~g~~~~~~~~R  280 (321)
T PRK10415        210 RAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR  280 (321)
T ss_pred             HHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf             99998629999997566536987799999998169979996999999999999999999869075699999