HHsearch alignment for GI: 254781020 and conserved domain: TIGR01037
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=99.98 E-value=1.3e-31 Score=204.58 Aligned_cols=264 Identities=14% Similarity=0.086 Sum_probs=187.1
Q ss_pred CEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHH-HCCEEECCCC----------------------HHHHCCH
Q ss_conf 6299898962568685012663343000256999999998-0990660520----------------------2211286
Q gi|254781020|r 46 PSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEK-TKVAMAVGSQ----------------------RVMFSDH 102 (337)
Q Consensus 46 lst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~-~g~~~~~g~~----------------------~~~~~~~ 102 (337)
T Consensus 1 Lev~l~Gi~~kNP~~lASG~~G~~------~~~l~~~~~~gaGA-VvTKs~g~~pr~Gy~nPtiVE~~~G~lNAiGL~NP 73 (308)
T TIGR01037 1 LEVELFGIRFKNPVILASGVMGSG------VEALRRIDRSGAGA-VVTKSIGLEPRPGYRNPTIVEVPCGLLNAIGLQNP 73 (308)
T ss_pred CCEECCCCCCCCCCEEECCCCCCC------HHHHHHHHCCCCCE-EEECCEECCCCCCCCCCEEEECCCCEEEECCCCCH
T ss_conf 911106702106610221103662------88999875058863-78621331588854438079817855752358982
Q ss_pred HHHHHHH----HHHHCC--CHHHHHCCCCCCCCCCCCHHHHHHHHHHH----C-CCEEEECCCCHHHHHHHCCCCC---H
Q ss_conf 6888999----998664--01232202752123679989999877650----8-9857625320356652068852---4
Q gi|254781020|r 103 NAIKSFE----LRQYAP--HTVLISNLGAVQLNYDFGVQKAHQAVHVL----G-ADGLFLHLNPLQEIIQPNGNTN---F 168 (337)
Q Consensus 103 ~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~---~ 168 (337)
T Consensus 74 G~e~fl~E~~~~~~e~~t~dvr~I~svyG~------~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G-~G~~iG~dP 146 (308)
T TIGR01037 74 GVEAFLEELKDVREEVPTHDVRLIASVYGE------SEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGG-GGIEIGQDP 146 (308)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCC------CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC-CCCCCCCCH
T ss_conf 179999863256643898752899983188------8225899999872113440000104777443423-465547787
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHCCCCHH
Q ss_conf 30799999999873997178504786688-999999976997999458888-6510012310234432324431063468
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDWGIPTP 246 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~gi~~~ 246 (337)
T Consensus 147 ~l~~~vv~avK~~~d~Pv~aKLsPNV~Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~GGlSGPAIKPi 226 (308)
T TIGR01037 147 ELSADVVKAVKDKVDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKTGGLSGPAIKPI 226 (308)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCE
T ss_conf 79999999983000786578648656689999888753277616400120346777342078700004588507501422
Q ss_pred H--HHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8--999998-5228987997298888899999998388852334799998414668999999999999999999808985
Q gi|254781020|r 247 L--SLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 247 ~--al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
T Consensus 227 A~r~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g---~----~~f~~i~~~l~~fl~~~~~~s 299 (308)
T TIGR01037 227 AVRMVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG---Y----KVFKKIIEGLIAFLKEEGFSS 299 (308)
T ss_pred EEEEHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC---C----CCCHHHHHHHHHHHHHCCCCC
T ss_conf 121000047773782346863274558999999985220220002221177---5----244888767889998728964
Q ss_pred HHHHHCC
Q ss_conf 7896149
Q gi|254781020|r 324 VQELYLN 330 (337)
Q Consensus 324 i~el~~~ 330 (337)
T Consensus 300 i~e~iG~ 306 (308)
T TIGR01037 300 IEELIGL 306 (308)
T ss_pred HHHHHCC
T ss_conf 4774013