HHsearch alignment for GI: 254781020 and conserved domain: TIGR01769

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=93.15  E-value=0.54  Score=24.23  Aligned_cols=143  Identities=18%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------------
Q ss_conf             989999877650898576253203566520688524307999999998739971785047866889--------------
Q gi|254781020|r  133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSM--------------  198 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~--------------  198 (337)
T Consensus        14 ~~~~IAk~~~~aGtD~ilvGGs~G---------i~e~~ld~~v~~ik~~~~~p~iLFP-G~~~~Ls~~ADAvlFmSlLNS   83 (212)
T TIGR01769        14 ELKKIAKNAKEAGTDAILVGGSLG---------ISEDKLDQVVKKIKEITNLPVILFP-GSVNLLSRKADAVLFMSLLNS   83 (212)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCC---------CCHHHHHHHHHHHHHCCCCCEEECC-CCHHHHHHHHHHHHHHHHHCC
T ss_conf             699999999852898898366337---------3354788999986401578668827-884578888659888886536


Q ss_pred             ------------HHHHHHHCC--C----CEEEECCCCC-CCCCCHHHHCCCCCCC---C---------------HHHHHC
Q ss_conf             ------------999999769--9----7999458888-6510012310234432---3---------------244310
Q gi|254781020|r  199 ------------DIELGLKSG--I----RYFDIAGRGG-TSWSRIESHRDLESDI---G---------------IVFQDW  241 (337)
Q Consensus       199 ------------~~~~a~~aG--a----d~i~v~~~gG-~~~~~~~~~r~~~~~~---~---------------~~~~~~  241 (337)
T Consensus        84 ~d~yfivGaqi~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGS  163 (212)
T TIGR01769        84 ADTYFIVGAQIKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGS  163 (212)
T ss_pred             CCCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99736741515789999872788563652268875887404465200125899866689999999987413512131057


Q ss_pred             CCCHH---HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf             63468---899999852289879972988888999999983888523
Q gi|254781020|r  242 GIPTP---LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGG  285 (337)
Q Consensus       242 gi~~~---~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~  285 (337)
T Consensus       164 GAs~Pv~~e~i~~~k~~~~~I~LIVGGGIr~~EiA~~~v~aGAd~IV  210 (212)
T TIGR01769       164 GASEPVSPETISLVKKKISSIPLIVGGGIRSPEIALKIVLAGADVIV  210 (212)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf             86667866799999985489727752775888999999970898263