HHsearch alignment for GI: 254781020 and conserved domain: TIGR02151

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=512.56  Aligned_cols=333  Identities=44%  Similarity=0.707  Sum_probs=319.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHH
Q ss_conf             5789999985302558974---7568863032455789981017462998989625686850126633430002569999
Q gi|254781020|r    4 DRKIDHINIVCKDPGIDRN---KKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLA   80 (337)
Q Consensus         4 ~~~~~~i~~a~~e~~~~~n---~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA   80 (337)
T Consensus         1 ~RK~eHi~~cl~~~~~~~~~~~~~~f~d~~liH~aLPe~~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA   80 (349)
T TIGR02151         1 ERKDEHIELCLKENVESGNRSVSTGFDDIKLIHNALPEINLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLA   80 (349)
T ss_pred             CCHHHHHHHHHCCCHHCCCCCCCCCCCEEEECCCCCCCCCHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             97489999860200110474544454111343456876775362642444682211676761455773678889989999


Q ss_pred             HHHHHHCCEEECCCCHHHHCCHHHHHHH-HHHHHCCCHHHHHCCCCCCCCCC---CCHHHHHHHHHHHCCCEEEECCCCH
Q ss_conf             9999809906605202211286688899-99986640123220275212367---9989999877650898576253203
Q gi|254781020|r   81 IAAEKTKVAMAVGSQRVMFSDHNAIKSF-ELRQYAPHTVLISNLGAVQLNYD---FGVQKAHQAVHVLGADGLFLHLNPL  156 (337)
Q Consensus        81 ~aa~~~g~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  156 (337)
T Consensus        81 ~aA~e~gi~mgvGSqraal~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~AdAL~iHlN~~  160 (349)
T TIGR02151        81 RAAEELGIPMGVGSQRAALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIEADALAIHLNVL  160 (349)
T ss_pred             HHHHHHCCCEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998198154300222112712466699999767983378717878874065344889999999875101335543233


Q ss_pred             HHHHHHCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCC---
Q ss_conf             566520688524-3079999999987399717850478668899999997699799945888865100123102344---
Q gi|254781020|r  157 QEIIQPNGNTNF-ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLES---  232 (337)
Q Consensus       157 ~~~~~~~~~~~~-~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~---  232 (337)
T Consensus       161 QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~  240 (349)
T TIGR02151       161 QELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQ  240 (349)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf             02557999701565389999999965289879982157998899999987890088707876755999998875157523


Q ss_pred             -C--CCHHHHHCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf             -3--2324431063468899999852-2898799729888889999999838885233479999841-466899999999
Q gi|254781020|r  233 -D--IGIVFQDWGIPTPLSLEMARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM-DSSDAVVAAIES  307 (337)
Q Consensus       233 -~--~~~~~~~~gi~~~~al~~~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~  307 (337)
T Consensus       241 ~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~~~~~g~e~~~~~~~~  320 (349)
T TIGR02151       241 KYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKAALDEGEEAVIEEIEL  320 (349)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             57888777741488668999998642124773688467778889999999621188888999998852698899999999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf             99999999998089857896149600056
Q gi|254781020|r  308 LRKEFIVSMFLLGTKRVQELYLNTALIRH  336 (337)
Q Consensus       308 l~~el~~~m~~~G~~~i~el~~~~~~i~~  336 (337)
T Consensus       321 ~~~eLk~~mfl~G~~~i~EL~~~~~v~~~  349 (349)
T TIGR02151       321 IIEELKVAMFLTGAKNIKELKKVPLVISG  349 (349)
T ss_pred             HHHHHHHHHHHHCCCCHHHHCCCCEEEEC
T ss_conf             99999999987179887986178715419