HHsearch alignment for GI: 254781020 and conserved domain: TIGR02151
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=512.56 Aligned_cols=333 Identities=44% Similarity=0.707 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHH
Q ss_conf 5789999985302558974---7568863032455789981017462998989625686850126633430002569999
Q gi|254781020|r 4 DRKIDHINIVCKDPGIDRN---KKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLA 80 (337)
Q Consensus 4 ~~~~~~i~~a~~e~~~~~n---~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA 80 (337)
T Consensus 1 ~RK~eHi~~cl~~~~~~~~~~~~~~f~d~~liH~aLPe~~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA 80 (349)
T TIGR02151 1 ERKDEHIELCLKENVESGNRSVSTGFDDIKLIHNALPEINLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLA 80 (349)
T ss_pred CCHHHHHHHHHCCCHHCCCCCCCCCCCEEEECCCCCCCCCHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97489999860200110474544454111343456876775362642444682211676761455773678889989999
Q ss_pred HHHHHHCCEEECCCCHHHHCCHHHHHHH-HHHHHCCCHHHHHCCCCCCCCCC---CCHHHHHHHHHHHCCCEEEECCCCH
Q ss_conf 9999809906605202211286688899-99986640123220275212367---9989999877650898576253203
Q gi|254781020|r 81 IAAEKTKVAMAVGSQRVMFSDHNAIKSF-ELRQYAPHTVLISNLGAVQLNYD---FGVQKAHQAVHVLGADGLFLHLNPL 156 (337)
Q Consensus 81 ~aa~~~g~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (337)
T Consensus 81 ~aA~e~gi~mgvGSqraal~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~AdAL~iHlN~~ 160 (349)
T TIGR02151 81 RAAEELGIPMGVGSQRAALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIEADALAIHLNVL 160 (349)
T ss_pred HHHHHHCCCEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998198154300222112712466699999767983378717878874065344889999999875101335543233
Q ss_pred HHHHHHCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCC---
Q ss_conf 566520688524-3079999999987399717850478668899999997699799945888865100123102344---
Q gi|254781020|r 157 QEIIQPNGNTNF-ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLES--- 232 (337)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~--- 232 (337)
T Consensus 161 QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~ 240 (349)
T TIGR02151 161 QELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQ 240 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 02557999701565389999999965289879982157998899999987890088707876755999998875157523
Q ss_pred -C--CCHHHHHCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf -3--2324431063468899999852-2898799729888889999999838885233479999841-466899999999
Q gi|254781020|r 233 -D--IGIVFQDWGIPTPLSLEMARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM-DSSDAVVAAIES 307 (337)
Q Consensus 233 -~--~~~~~~~~gi~~~~al~~~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~ 307 (337)
T Consensus 241 ~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~~~~~g~e~~~~~~~~ 320 (349)
T TIGR02151 241 KYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKAALDEGEEAVIEEIEL 320 (349)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 57888777741488668999998642124773688467778889999999621188888999998852698899999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999998089857896149600056
Q gi|254781020|r 308 LRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 308 l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
T Consensus 321 ~~~eLk~~mfl~G~~~i~EL~~~~~v~~~ 349 (349)
T TIGR02151 321 IIEELKVAMFLTGAKNIKELKKVPLVISG 349 (349)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCEEEEC
T ss_conf 99999999987179887986178715419