HHsearch alignment for GI: 254781020 and conserved domain: TIGR02814

>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=94.84  E-value=0.12  Score=28.05  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHC-CCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH--H--HHCCCC--EEEECCC
Q ss_conf             688999999976-99799945-88886510012310234432324431063468899999--8--522898--7997298
Q gi|254781020|r  195 LSSMDIELGLKS-GIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA--R--PYCNEA--QFIASGG  266 (337)
Q Consensus       195 ~~~~~~~~a~~a-Gad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~--~--~~~~~v--~IiadGG  266 (337)
T Consensus       169 it~eeAeLA~~vPvAdDi~vEADSGG----------HTD~r~~~vL----LP~i~rLRD~~~~~~gY~~~irvRvGaAGG  234 (449)
T TIGR02814       169 ITEEEAELAAEVPVADDICVEADSGG----------HTDNRPLVVL----LPAIIRLRDTLMRKYGYRKPIRVRVGAAGG  234 (449)
T ss_pred             CCHHHHHHHHHCCCCCCEEEECCCCC----------CCCCHHHHHH----HHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             68789999841773036037526833----------9762288999----899999999999982789874378735777


Q ss_pred             CCCHHHHHHHHHHCCCEEHHHH
Q ss_conf             8888999999983888523347
Q gi|254781020|r  267 LRNGVDILKSIILGASLGGLAS  288 (337)
Q Consensus       267 Ir~g~Dv~kAlalGAdaV~iGr  288 (337)
T Consensus       235 iGtPeAvaAAF~LGA~FiVTGS  256 (449)
T TIGR02814       235 IGTPEAVAAAFMLGADFIVTGS  256 (449)
T ss_pred             CCCHHHHHHHHHCCCCEEECCC
T ss_conf             7727999999733742574186