HHsearch alignment for GI: 254781020 and conserved domain: TIGR02814
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=94.84 E-value=0.12 Score=28.05 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHC-CCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH--H--HHCCCC--EEEECCC
Q ss_conf 688999999976-99799945-88886510012310234432324431063468899999--8--522898--7997298
Q gi|254781020|r 195 LSSMDIELGLKS-GIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA--R--PYCNEA--QFIASGG 266 (337)
Q Consensus 195 ~~~~~~~~a~~a-Gad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~--~--~~~~~v--~IiadGG 266 (337)
T Consensus 169 it~eeAeLA~~vPvAdDi~vEADSGG----------HTD~r~~~vL----LP~i~rLRD~~~~~~gY~~~irvRvGaAGG 234 (449)
T TIGR02814 169 ITEEEAELAAEVPVADDICVEADSGG----------HTDNRPLVVL----LPAIIRLRDTLMRKYGYRKPIRVRVGAAGG 234 (449)
T ss_pred CCHHHHHHHHHCCCCCCEEEECCCCC----------CCCCHHHHHH----HHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 68789999841773036037526833----------9762288999----899999999999982789874378735777
Q ss_pred CCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 8888999999983888523347
Q gi|254781020|r 267 LRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 267 Ir~g~Dv~kAlalGAdaV~iGr 288 (337)
T Consensus 235 iGtPeAvaAAF~LGA~FiVTGS 256 (449)
T TIGR02814 235 IGTPEAVAAAFMLGADFIVTGS 256 (449)
T ss_pred CCCHHHHHHHHHCCCCEEECCC
T ss_conf 7727999999733742574186