HHsearch alignment for GI: 254781020 and conserved domain: TIGR03249
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.61 E-value=0.11 Score=28.33 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHC--CCCEEE
Q ss_conf 99987765089857625320356652068852430799999999873997178504-786688999999976--997999
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKS--GIRYFD 212 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~a--Gad~i~ 212 (337)
T Consensus 90 ~la~~a~~~Gad~v~v~pPyy-------~~~~~~~l~~~f~~ia~a~~~pi~lYn~~~~~~~~~~l~~L~~~~p~i~giK 162 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYL-------INGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred HHHHHHHHCCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 999999875999789779988-------9999999999999999715997787307787879999999981579879999
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHHCCCCEEEECCCCCC-HHHHHHHHHHCCCEEHHHH
Q ss_conf 458888651001231023443232443106346889999-985228987997298888-8999999983888523347
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-ARPYCNEAQFIASGGLRN-GVDILKSIILGASLGGLAS 288 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~~~~~~v~IiadGGIr~-g~Dv~kAlalGAdaV~iGr 288 (337)
T Consensus 163 ~s~--~--------------------------d~~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~G~~g~i~~~ 210 (296)
T TIGR03249 163 DGI--G--------------------------DMEQMIEITQRLGDRLGYL--GGMPTAEVTAPAYLPLGVTSYSSAI 210 (296)
T ss_pred ECC--C--------------------------CHHHHHHHHHHCCCCCEEE--ECCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 776--6--------------------------8999999999739972797--3897128999999938998996246