HHsearch alignment for GI: 254781020 and conserved domain: cd02808
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=2e-33 Score=215.12 Aligned_cols=305 Identities=23% Similarity=0.231 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC---CCHHHCCCEEEECCE-----EECCCEEEECHHHHHHHHCHHH
Q ss_conf 57899999853025589747568863032455789---981017462998989-----6256868501266334300025
Q gi|254781020|r 4 DRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPE---ISFDEVDPSVEFLGK-----KLSFPLLISSMTGGNNKMIERI 75 (337)
Q Consensus 4 ~~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~---~~~~~vdlst~i~G~-----~l~~Pv~iapmsgg~~~~~~~~ 75 (337)
T Consensus 17 ~r~~~~~~y~~~~~~~~~~f~s~~d~~~~~~~~~~~~~~~~~~~~~~v~ig~~~~~p~~~~~p~~is~MS~GalS--~~a 94 (392)
T cd02808 17 NRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALS--KEA 94 (392)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCEEECCCCCCCCHHCCEEECCCCCCCCCC--HHH
T ss_conf 489999999985288887788877751157200258999777888726858887785421050322566776579--999
Q ss_pred HHHHHHHHHHHCCEEECCCCHHHHCCHHHHH---------HHHHHHHCCCHHHHHCCCCCCCC----------CCCCHHH
Q ss_conf 6999999998099066052022112866888---------99999866401232202752123----------6799899
Q gi|254781020|r 76 NRNLAIAAEKTKVAMAVGSQRVMFSDHNAIK---------SFELRQYAPHTVLISNLGAVQLN----------YDFGVQK 136 (337)
Q Consensus 76 ~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 136 (337)
T Consensus 95 ~~ALa~ga~~~G~~~ntGEGg~~~~~~~~~~~~i~Qi~sg~fGv~~~~~~~v~~iEIK~gQGAKpG~GG~Lpg~KVt~-e 173 (392)
T cd02808 95 KEALAIGAALAGTASNTGEGGELPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTE-E 173 (392)
T ss_pred HHHHHHHHHHHCCEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCH-H
T ss_conf 999999999738465158888899999735787998447756768899075136999833788899888076454579-9
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCC---HHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHH-HHCCCCEE
Q ss_conf 9987765089857625320356652068852---4307999999998739-97178504786688999999-97699799
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTN---FADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELG-LKSGIRYF 211 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a-~~aGad~i 211 (337)
T Consensus 174 IA~~----------R~~~~G~d~iSP~~h~~i~s~edl~~~I~~LR~~~~~kpVgvKl~~g~-~~~~l~~~~~~~~~DfI 242 (392)
T cd02808 174 IAKI----------RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFI 242 (392)
T ss_pred HHHH----------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEE
T ss_conf 9988----------089999887799765666999999999999997289980799968889-88999999996479999
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH------HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 945888865100123102344323244310634688999998------52289879972988888999999983888523
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR------PYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~------~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
T Consensus 243 tIDG~eGGTGAaP~~~~----------d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~ 312 (392)
T cd02808 243 TIDGAEGGTGAAPLTFI----------DHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVG 312 (392)
T ss_pred EEECCCCCCCCCHHHHH----------HCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHH
T ss_conf 96079987541429999----------74997389999999999997699676379963885747899999986756451
Q ss_pred HHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 347999984------------------------------14668999999999999999999808985789614960
Q gi|254781020|r 286 LASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTA 332 (337)
Q Consensus 286 iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~ 332 (337)
T Consensus 313 ~a~~~m~alGCiq~~~C~~~~CP~GiaTqd~~l~~~l~~~~~a~rv~ny~~~~~~el~~~~~a~G~~~~~~l~r~dl 389 (392)
T cd02808 313 IGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDL 389 (392)
T ss_pred HCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf 05699998747997650599899611137988841468654699999999999999999999857999478898760