HHsearch alignment for GI: 254781020 and conserved domain: cd02808

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00  E-value=2e-33  Score=215.12  Aligned_cols=305  Identities=23%  Similarity=0.231  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC---CCHHHCCCEEEECCE-----EECCCEEEECHHHHHHHHCHHH
Q ss_conf             57899999853025589747568863032455789---981017462998989-----6256868501266334300025
Q gi|254781020|r    4 DRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPE---ISFDEVDPSVEFLGK-----KLSFPLLISSMTGGNNKMIERI   75 (337)
Q Consensus         4 ~~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~---~~~~~vdlst~i~G~-----~l~~Pv~iapmsgg~~~~~~~~   75 (337)
T Consensus        17 ~r~~~~~~y~~~~~~~~~~f~s~~d~~~~~~~~~~~~~~~~~~~~~~v~ig~~~~~p~~~~~p~~is~MS~GalS--~~a   94 (392)
T cd02808          17 NRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALS--KEA   94 (392)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCEEECCCCCCCCHHCCEEECCCCCCCCCC--HHH
T ss_conf             489999999985288887788877751157200258999777888726858887785421050322566776579--999


Q ss_pred             HHHHHHHHHHHCCEEECCCCHHHHCCHHHHH---------HHHHHHHCCCHHHHHCCCCCCCC----------CCCCHHH
Q ss_conf             6999999998099066052022112866888---------99999866401232202752123----------6799899
Q gi|254781020|r   76 NRNLAIAAEKTKVAMAVGSQRVMFSDHNAIK---------SFELRQYAPHTVLISNLGAVQLN----------YDFGVQK  136 (337)
Q Consensus        76 ~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  136 (337)
T Consensus        95 ~~ALa~ga~~~G~~~ntGEGg~~~~~~~~~~~~i~Qi~sg~fGv~~~~~~~v~~iEIK~gQGAKpG~GG~Lpg~KVt~-e  173 (392)
T cd02808          95 KEALAIGAALAGTASNTGEGGELPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTE-E  173 (392)
T ss_pred             HHHHHHHHHHHCCEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCH-H
T ss_conf             999999999738465158888899999735787998447756768899075136999833788899888076454579-9


Q ss_pred             HHHHHHHHCCCEEEECCCCHHHHHHHCCCCC---HHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHH-HHCCCCEE
Q ss_conf             9987765089857625320356652068852---4307999999998739-97178504786688999999-97699799
Q gi|254781020|r  137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTN---FADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELG-LKSGIRYF  211 (337)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a-~~aGad~i  211 (337)
T Consensus       174 IA~~----------R~~~~G~d~iSP~~h~~i~s~edl~~~I~~LR~~~~~kpVgvKl~~g~-~~~~l~~~~~~~~~DfI  242 (392)
T cd02808         174 IAKI----------RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFI  242 (392)
T ss_pred             HHHH----------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEE
T ss_conf             9988----------089999887799765666999999999999997289980799968889-88999999996479999


Q ss_pred             EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH------HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf             945888865100123102344323244310634688999998------52289879972988888999999983888523
Q gi|254781020|r  212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR------PYCNEAQFIASGGLRNGVDILKSIILGASLGG  285 (337)
Q Consensus       212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~------~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~  285 (337)
T Consensus       243 tIDG~eGGTGAaP~~~~----------d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~  312 (392)
T cd02808         243 TIDGAEGGTGAAPLTFI----------DHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVG  312 (392)
T ss_pred             EEECCCCCCCCCHHHHH----------HCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHH
T ss_conf             96079987541429999----------74997389999999999997699676379963885747899999986756451


Q ss_pred             HHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf             347999984------------------------------14668999999999999999999808985789614960
Q gi|254781020|r  286 LASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTA  332 (337)
Q Consensus       286 iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~  332 (337)
T Consensus       313 ~a~~~m~alGCiq~~~C~~~~CP~GiaTqd~~l~~~l~~~~~a~rv~ny~~~~~~el~~~~~a~G~~~~~~l~r~dl  389 (392)
T cd02808         313 IGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDL  389 (392)
T ss_pred             HCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf             05699998747997650599899611137988841468654699999999999999999999857999478898760