HHsearch alignment for GI: 254781020 and conserved domain: cd02812
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=93.67 E-value=0.21 Score=26.61 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 0799999999873-9971785047866889999999769979994588
Q gi|254781020|r 170 DLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 170 ~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
T Consensus 161 v~~e~V~~vk~~l~~~~Liv--GGGIrs~e~a~~~~~AgAD~IVvGn~ 206 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIV--GGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred CCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999998467970999--28979999999999869999998872