HHsearch alignment for GI: 254781020 and conserved domain: cd02911
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.39 E-value=8.1e-11 Score=82.06 Aligned_cols=122 Identities=19% Similarity=0.111 Sum_probs=85.1
Q ss_pred CCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEEC-CC-CCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8985762532035665206885-----2430799999999873997178504-78-668899999997699799945888
Q gi|254781020|r 145 GADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEV-GC-GLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v-~~-~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
T Consensus 97 ~~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~-~~~PVtvKiR~G~d~~~~~~a~~~e~aG~~~l~v~~~~ 175 (233)
T cd02911 97 NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD 175 (233)
T ss_pred CCCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 69999997999928983797537773898999999999985-38984279856999888999999998396079943207
Q ss_pred CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 218 GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 218 G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
T Consensus 176 ~~~~-------------------------ad~~~I~~~~~~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL~ 225 (233)
T cd02911 176 PGNH-------------------------ADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARASLP 225 (233)
T ss_pred CCCH-------------------------HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHCC
T ss_conf 7850-------------------------8999999863798799808969999999999859999997387556