HHsearch alignment for GI: 254781020 and conserved domain: cd02922
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=0 Score=416.09 Aligned_cols=290 Identities=23% Similarity=0.276 Sum_probs=239.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
T Consensus 17 dYi~gGA~de~Tl~~N~~Af~~~~l~Pr~L--~dvs~~dtst~l~G~~~~~P~~iAP~-g~~~l~hp~gE~a~AraA~~~ 93 (344)
T cd02922 17 AYYSSGADDEITLRENLEAFQRIRFRPRVL--RDVEKVDTSTTILGHKVSLPFFISPA-ALAKLAHPDGELNLARAAGKH 93 (344)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCEECCCCEEECHH-HHHHHCCCCHHHHHHHHHHHC
T ss_conf 987046662499999999998476765332--48888988556898336775156647-776432884569999999974
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCC-CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCC-
Q ss_conf 99066052022112866888999998664-0123220275212367998999987765089857625320356652068-
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAP-HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNG- 164 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (337)
T Consensus 94 gi~~~lSt~ss~slEdVa~a-------~~~~~~~wfQLY~~-~dr~~-~~~li~RA~~aG~~alvlTvD~p~~G~R~rd~ 164 (344)
T cd02922 94 GILQMISTNASCSLEEIVDA-------RPPDQPLFFQLYVN-KDRTK-TEELLKRAEKLGAKAIFLTVDAPVLGKRERDE 164 (344)
T ss_pred CCCEEEECCCCCCHHHHHHH-------CCCCCCEEEEEECC-CCHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
T ss_conf 88657405777888999986-------56898669998247-76799-99999999986998899956788877522666
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf ------------------------------85243079999999987399717850478668899999997699799945
Q gi|254781020|r 165 ------------------------------NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 165 ------------------------------~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
T Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tw~di~~lr~~~~~plivKGI---l~~~DA~~A~~~G~dgIiVS 241 (344)
T cd02922 165 RLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV---QTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCEEEEE
T ss_conf 507777887665433334466316677775048889999999999866997010025---77999999996599889971
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 888865100123102344323244310634688999998----5228987997298888899999998388852334799
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR----PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~----~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
T Consensus 242 NHGG---------RqLD~~~---------~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~G~DV~KAlALGA~aV~iGRp~ 303 (344)
T cd02922 242 NHGG---------RQLDTAP---------APIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPF 303 (344)
T ss_pred CCCC---------CCCCCCC---------CHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 8862---------1257883---------189998999998898588708997188575789999997699989767899
Q ss_pred HHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 9984-146689999999999999999998089857896149
Q gi|254781020|r 291 LKPA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 291 l~~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
T Consensus 304 l~gla~~G~~Gv~~~l~il~~El~~~M~l~G~~si~~l~pS 344 (344)
T cd02922 304 LYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 99988443999999999999999999998589988874998