HHsearch alignment for GI: 254781020 and conserved domain: cd02932
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.54 E-value=7e-06 Score=52.98 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHHHCCCEEEECCCCHHHH---HHH-CC---CCC-------HHHHHHHHHHHHHHCC--CCEEEEECC-----CCCCH
Q ss_conf 877650898576253203566---520-68---852-------4307999999998739--971785047-----86688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQEI---IQP-NG---NTN-------FADLSSKIALLSSAMD--VPLLLKEVG-----CGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~---~~~-------~~~~~~~i~~l~~~~~--~pii~k~v~-----~~~~~ 197 (337)
T Consensus 161 ~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 99998399999863137479998369411677786799789998899999999999839988706896452357899899
Q ss_pred HH----HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 99----99999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 198 MD----IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 198 ~~----~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
T Consensus 241 ~e~~~~a~~l~~~gvd~i~vs~G~~~~~~~~------~-------~~~~~-~~~~a~~ik~-~~~ipvi~~G~i~~p~~a 305 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSSGGNSPAQKI------P-------VGPGY-QVPFAERIRQ-EAGIPVIAVGLITDPEQA 305 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC------C-------CCCCC-CHHHHHHHHH-HCCCCEEEECCCCCHHHH
T ss_conf 9999999999975997899558987766667------7-------78642-6799999998-789839997998999999
Q ss_pred HHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999838-885233479999
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~ 292 (337)
T Consensus 306 e~~l~~G~~DlV~~gR~~ia 325 (336)
T cd02932 306 EAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHCCCCEEHHHHHHHHH
T ss_conf 99998799400686799997