HHsearch alignment for GI: 254781020 and conserved domain: cd02940
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.92 E-value=6e-23 Score=153.49 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=147.1
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH-----------------------HC
Q ss_conf 46299898962568685012663343000256999999998099066-0520221-----------------------12
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM-----------------------FS 100 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~-----------------------~~ 100 (337)
T Consensus 1 dL~t~~~Gl~~~nPi~lAAG~-~~~------~~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~~~~~g~~ 73 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAP-PTT------SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFN 73 (299)
T ss_pred CCCEEECCEECCCCCEECCCC-CCC------CHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCHHHHCCCC
T ss_conf 998788999889986878778-998------9999999998798889915689887888999987898876625521337
Q ss_pred C------HHHHHHHH----HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-HCCC---C
Q ss_conf 8------66888999----9986640123220275212367998999987765089857625320356652-0688---5
Q gi|254781020|r 101 D------HNAIKSFE----LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ-PNGN---T 166 (337)
Q Consensus 101 ~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~ 166 (337)
T Consensus 74 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~--~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~ 151 (299)
T cd02940 74 NIELISEKPLEYWLKEIRELKKDFPDKILIASIMCE--YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ 151 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCC
T ss_conf 840121202999999999987527997379885178--987899999999987188889982678898761234555244
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCC-CCCCHHHHCCCCC----CCCHHHHH
Q ss_conf 2430799999999873997178504786688-9999999769979994588886-5100123102344----32324431
Q gi|254781020|r 167 NFADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGT-SWSRIESHRDLES----DIGIVFQD 240 (337)
Q Consensus 167 ~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~-~~~~~~~~r~~~~----~~~~~~~~ 240 (337)
T Consensus 152 ~~~~l~~i~~~v~~~~~~Pi~vKLsP~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG 231 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG 231 (299)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999986247864896288715499999999985998999976667756544223566656456777784558
Q ss_pred CCCCHH--HHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHH
Q ss_conf 063468--8999998-522898799729888889999999838885233479999841466899999
Q gi|254781020|r 241 WGIPTP--LSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAA 304 (337)
Q Consensus 241 ~gi~~~--~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~ 304 (337)
T Consensus 232 ~~l~~~al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~---~Gp~~i~~I 295 (299)
T cd02940 232 PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN---QGFTIVDDM 295 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHHHHHHH
T ss_conf 7889999999999999648997789989959999999999849989999899998---098999999