HHsearch alignment for GI: 254781020 and conserved domain: cd04727
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.90 E-value=0.018 Score=32.90 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC--CCHHHHH---------HHHHHHHHHHHH
Q ss_conf 99999852289--8799729888889999999838885233479999841--4668999---------999999999999
Q gi|254781020|r 248 SLEMARPYCNE--AQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM--DSSDAVV---------AAIESLRKEFIV 314 (337)
Q Consensus 248 al~~~~~~~~~--v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~--~G~~gv~---------~~l~~l~~el~~ 314 (337)
T Consensus 185 lv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy~dp~~laevS~~Lge 263 (283)
T cd04727 185 LVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAEVSEGLGE 263 (283)
T ss_pred HHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 99999997-89763664267858837799999728987887765457899999999999998465889999999704664
Q ss_pred HHHHCCCCCH
Q ss_conf 9998089857
Q gi|254781020|r 315 SMFLLGTKRV 324 (337)
Q Consensus 315 ~m~~~G~~~i 324 (337)
T Consensus 264 aM~Gi~i~~l 273 (283)
T cd04727 264 AMVGIDIASL 273 (283)
T ss_pred CCCCCCHHHC
T ss_conf 6788881228