HHsearch alignment for GI: 254781020 and conserved domain: cd04729
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.73 E-value=1.5e-06 Score=57.02 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCC----CCCCCCHHHHHHHHHHHCCCE
Q ss_conf 0256999999998099066052022112866888999998664012322027521----236799899998776508985
Q gi|254781020|r 73 ERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQ----LNYDFGVQKAHQAVHVLGADG 148 (337)
Q Consensus 73 ~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 148 (337)
T Consensus 26 ~~im~~mA~Aa~~gGA~giR~--------~~~~dI~aIk-~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~-aGadi 95 (219)
T cd04729 26 PEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIR-ARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAA-AGADI 95 (219)
T ss_pred HHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHH-HCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHH-CCCCE
T ss_conf 789999999999789639980--------8988999998-3289988999956889998456688999999998-59999
Q ss_pred EEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE--ECCCCCCCCCCHHH
Q ss_conf 7625320356652068852430799999999873997178504786688999999976997999--45888865100123
Q gi|254781020|r 149 LFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD--IAGRGGTSWSRIES 226 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~--v~~~gG~~~~~~~~ 226 (337)
T Consensus 96 IA~Da--T-----~R~RP~g~~l~~~i~~i~~~~~~l~----MAD~st~ee~~~A~~~G~D~vgTTL~GYT~--~t---- 158 (219)
T cd04729 96 IALDA--T-----DRPRPDGETLAELIKRIHEEYNCLL----MADISTLEEALNAAKLGFDIIGTTLSGYTE--ET---- 158 (219)
T ss_pred EEEEC--C-----CCCCCCCCCHHHHHHHHHHHHCCEE----EEECCCHHHHHHHHHCCCCEEECCCCCCCC--CC----
T ss_conf 99946--7-----8879899789999999999869778----875488999999998499899702145677--87----
Q ss_pred HCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 1023443232443106346889999985228987997298888899999998388852334799
Q gi|254781020|r 227 HRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 227 ~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
T Consensus 159 -~~~--------~---~PD~~lv~~l~~~-~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI 209 (219)
T cd04729 159 -AKT--------E---DPDFELLKELRKA-LGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred -CCC--------C---CCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf -889--------9---9878999999997-5993997069899999999998399899989543