HHsearch alignment for GI: 254781020 and conserved domain: cd04732

>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.87  E-value=0.00018  Score=44.67  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=50.0

Q ss_pred             HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf             8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r  197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL  274 (337)
Q Consensus       197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~  274 (337)
T Consensus       149 ~~~i~~~~~~g~geiilt~i~~dGt~------------------~G~d~---~ll~~i~~~-~~~p~i~~GGv~s~~di~  206 (234)
T cd04732         149 EELAKRFEELGVKAIIYTDISRDGTL------------------SGPNF---ELYKELAAA-TGIPVIASGGVSSLDDIK  206 (234)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCC------------------CCCCH---HHHHHHHHH-CCCCEEEEECCCCHHHHH
T ss_conf             99999997458646998764256653------------------56899---999999865-799899981899999999


Q ss_pred             HHHHHCCCEEHHHHHHHHH
Q ss_conf             9998388852334799998
Q gi|254781020|r  275 KSIILGASLGGLASPFLKP  293 (337)
Q Consensus       275 kAlalGAdaV~iGr~~l~~  293 (337)
T Consensus       207 ~l~~~g~~gvivgsAlh~g  225 (234)
T cd04732         207 ALKELGVAGVIVGKALYEG  225 (234)
T ss_pred             HHHHCCCCEEEEEHHHHCC
T ss_conf             9997799899998898779