HHsearch alignment for GI: 254781020 and conserved domain: cd04736

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00  E-value=0  Score=404.39  Aligned_cols=285  Identities=22%  Similarity=0.279  Sum_probs=236.4

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r    8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT   86 (337)
Q Consensus         8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~   86 (337)
T Consensus        17 ~Y~~gGa~de~t~~~N~~af~~~~l~PrvL--~dv~~~d~st~llG~~~~~P~~iaP~-g~~~l~hp~gE~a~AraA~~~   93 (361)
T cd04736          17 DYLEGGAEDEKGLRHNRDAFDRWRFIPRRL--VDVSKRDISASLFGKVWSAPLVIAPT-GLNGAFWPNGDLALARAAAKA   93 (361)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCCCCCCCCCCCCEEECCH-HHHHHHCCCCHHHHHHHHHHC
T ss_conf             998525563599999999998475766223--58878997631588405785478763-577660888429999999987


Q ss_pred             CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH----
Q ss_conf             9906605202211286688899999866401232202752123679989999877650898576253203566520----
Q gi|254781020|r   87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP----  162 (337)
Q Consensus        87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  162 (337)
T Consensus        94 gi~~~lSt~ss~s~EeVa~~--------~~g~~wfQLY~~--~r~~-~~~li~RA~~aG~~alvlTvD~pv~G~Rerd~r  162 (361)
T cd04736          94 GIPFVLSTASNMSIEDVARQ--------ADGDLWFQLYVV--HREL-AELLVKRALAAGYTTLVLTTDVAVNGYRERDLR  162 (361)
T ss_pred             CCCEEECCCCCCCHHHHHHH--------CCCCEEEEEEEC--CHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
T ss_conf             98789679999999999862--------599847998872--8799-999999999859986899507888788835432


Q ss_pred             -----------------------------CCCC------------------------CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             -----------------------------6885------------------------24307999999998739971785
Q gi|254781020|r  163 -----------------------------NGNT------------------------NFADLSSKIALLSSAMDVPLLLK  189 (337)
Q Consensus       163 -----------------------------~~~~------------------------~~~~~~~~i~~l~~~~~~pii~k  189 (337)
T Consensus       163 ngf~~P~~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~~plilK  242 (361)
T cd04736         163 NGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK  242 (361)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             25678865567788775159388997650277310234677777705788998843688999999999998669974552


Q ss_pred             ECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             04786688999999976997999458888651001231023443232443106346889999985228987997298888
Q gi|254781020|r  190 EVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN  269 (337)
Q Consensus       190 ~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~  269 (337)
T Consensus       243 GI---~~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~a~---------~~id~Lp~I~~av-~~~V~~DgGIRr  300 (361)
T cd04736         243 GI---VTAEDAKRCIELGADGVILSNHGG---------RQLDDAI---------APIEALAEIVAAT-YKPVLIDSGIRR  300 (361)
T ss_pred             CC---CCHHHHHHHHHCCCCEEEECCCCC---------CCCCCCC---------CHHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf             14---899999999876999999758863---------3357774---------1477799999971-994999489887


Q ss_pred             HHHHHHHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             899999998388852334799998-41466899999999999999999980898578961
Q gi|254781020|r  270 GVDILKSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY  328 (337)
Q Consensus       270 g~Dv~kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~  328 (337)
T Consensus       301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~  360 (361)
T cd04736         301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT  360 (361)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf             899999997799989877899998771109999999999999999999985899867769