HHsearch alignment for GI: 254781020 and conserved domain: cd04736
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=0 Score=404.39 Aligned_cols=285 Identities=22% Similarity=0.279 Sum_probs=236.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
T Consensus 17 ~Y~~gGa~de~t~~~N~~af~~~~l~PrvL--~dv~~~d~st~llG~~~~~P~~iaP~-g~~~l~hp~gE~a~AraA~~~ 93 (361)
T cd04736 17 DYLEGGAEDEKGLRHNRDAFDRWRFIPRRL--VDVSKRDISASLFGKVWSAPLVIAPT-GLNGAFWPNGDLALARAAAKA 93 (361)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCCCCCCCCCCCCEEECCH-HHHHHHCCCCHHHHHHHHHHC
T ss_conf 998525563599999999998475766223--58878997631588405785478763-577660888429999999987
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH----
Q ss_conf 9906605202211286688899999866401232202752123679989999877650898576253203566520----
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP---- 162 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 162 (337)
T Consensus 94 gi~~~lSt~ss~s~EeVa~~--------~~g~~wfQLY~~--~r~~-~~~li~RA~~aG~~alvlTvD~pv~G~Rerd~r 162 (361)
T cd04736 94 GIPFVLSTASNMSIEDVARQ--------ADGDLWFQLYVV--HREL-AELLVKRALAAGYTTLVLTTDVAVNGYRERDLR 162 (361)
T ss_pred CCCEEECCCCCCCHHHHHHH--------CCCCEEEEEEEC--CHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 98789679999999999862--------599847998872--8799-999999999859986899507888788835432
Q ss_pred -----------------------------CCCC------------------------CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf -----------------------------6885------------------------24307999999998739971785
Q gi|254781020|r 163 -----------------------------NGNT------------------------NFADLSSKIALLSSAMDVPLLLK 189 (337)
Q Consensus 163 -----------------------------~~~~------------------------~~~~~~~~i~~l~~~~~~pii~k 189 (337)
T Consensus 163 ngf~~P~~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~~plilK 242 (361)
T cd04736 163 NGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK 242 (361)
T ss_pred CCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 25678865567788775159388997650277310234677777705788998843688999999999998669974552
Q ss_pred ECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 04786688999999976997999458888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 190 EVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 190 ~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
T Consensus 243 GI---~~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~a~---------~~id~Lp~I~~av-~~~V~~DgGIRr 300 (361)
T cd04736 243 GI---VTAEDAKRCIELGADGVILSNHGG---------RQLDDAI---------APIEALAEIVAAT-YKPVLIDSGIRR 300 (361)
T ss_pred CC---CCHHHHHHHHHCCCCEEEECCCCC---------CCCCCCC---------CHHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf 14---899999999876999999758863---------3357774---------1477799999971-994999489887
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 899999998388852334799998-41466899999999999999999980898578961
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
T Consensus 301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~ 360 (361)
T cd04736 301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 899999997799989877899998771109999999999999999999985899867769