HHsearch alignment for GI: 254781020 and conserved domain: cd04739
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.98 E-value=2.5e-30 Score=196.95 Aligned_cols=265 Identities=19% Similarity=0.114 Sum_probs=174.8
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCH---------------------------
Q ss_conf 46299898962568685012663343000256999999998099066-05202---------------------------
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQR--------------------------- 96 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~--------------------------- 96 (337)
T Consensus 1 DLst~~~Gl~l~NPi~~ASg--~~~~~-----~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASAS--PLSRN-----LDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSY 73 (325)
T ss_pred CCCEEECCEECCCCCEECCC--CCCCC-----HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 98579899967998885652--56899-----999999998596799979567423456778889888899887112140
Q ss_pred --HH-HCCHHHHHHHH-HHHH--CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHH
Q ss_conf --21-12866888999-9986--640123220275212367998999987765089857625320356652068852430
Q gi|254781020|r 97 --VM-FSDHNAIKSFE-LRQY--APHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFAD 170 (337)
Q Consensus 97 --~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (337)
T Consensus 74 ~n~~g~~n~g~e~~l~~i~~~~~~~~~pvI~Si~g~---s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~ 150 (325)
T cd04739 74 FPEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR 150 (325)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 332145575899999999998753598759871689---98999999999976499879996566788855442106889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 799999999873997178504786688-9999999769979994588886510012310234432324431063468899
Q gi|254781020|r 171 LSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 171 ~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
T Consensus 151 ~~~iv~~Vk~~~~~Pv~vKLsP~~~di~~ia~aa~~~GAdgi~liNT~~~~~id~~~~~~~~~~---~lSg~~~~~~-al 226 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNL---LLSSPAEIRL-PL 226 (325)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCC---CCCCCCCCHH-HH
T ss_conf 9999999986078866995399830099999999975998899735766564216764153687---7457530068-89
Q ss_pred HHHHHH--CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 999852--289879972988888999999983888523347999984146689999999999999999998089857896
Q gi|254781020|r 250 EMARPY--CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQEL 327 (337)
Q Consensus 250 ~~~~~~--~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el 327 (337)
T Consensus 227 r~v~~~~~~~~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~---~G~----~i~~~i~~eL~~~m~~~G~~si~e~ 299 (325)
T cd04739 227 RWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR---HGP----DYIGTLLAGLEAWMEEHGYESVQQL 299 (325)
T ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHH---HCC----HHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 999999646898988888959899999999809887614323464---183----7999999999999998399979996
Q ss_pred HCC
Q ss_conf 149
Q gi|254781020|r 328 YLN 330 (337)
Q Consensus 328 ~~~ 330 (337)
T Consensus 300 ~Gk 302 (325)
T cd04739 300 RGS 302 (325)
T ss_pred CCC
T ss_conf 273