HHsearch alignment for GI: 254781020 and conserved domain: cd04742
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.37 E-value=0.0058 Score=35.82 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHH-CCCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH----HHCCCCEEEECCCC
Q ss_conf 668899999997-699799945-888865100123102344323244310634688999998----52289879972988
Q gi|254781020|r 194 GLSSMDIELGLK-SGIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR----PYCNEAQFIASGGL 267 (337)
Q Consensus 194 ~~~~~~~~~a~~-aGad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~----~~~~~v~IiadGGI 267 (337)
T Consensus 163 ~iT~eqA~lA~~vPmAdDItvEaDSGG----------HTD~~~l~~----LlP~i~~LRd~~~~~~~y~~~iRvGaAGGI 228 (418)
T cd04742 163 KITEEQAELARRVPVADDITVEADSGG----------HTDNRPLSV----LLPTIIRLRDELAARYGYRRPIRVGAAGGI 228 (418)
T ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCC----------CCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf 988999998827985323677315787----------777864788----989999999999986188888411035887
Q ss_pred CCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 8889999999838885233479
Q gi|254781020|r 268 RNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 268 r~g~Dv~kAlalGAdaV~iGr~ 289 (337)
T Consensus 229 GTP~aaaAAF~mGA~yVvTGSI 250 (418)
T cd04742 229 GTPEAAAAAFALGADFIVTGSI 250 (418)
T ss_pred CCHHHHHHHHHCCCCEEEECCH
T ss_conf 9879999999717744895553