HHsearch alignment for GI: 254781020 and conserved domain: cd04742

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.37  E-value=0.0058  Score=35.82  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHH-CCCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH----HHCCCCEEEECCCC
Q ss_conf             668899999997-699799945-888865100123102344323244310634688999998----52289879972988
Q gi|254781020|r  194 GLSSMDIELGLK-SGIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR----PYCNEAQFIASGGL  267 (337)
Q Consensus       194 ~~~~~~~~~a~~-aGad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~----~~~~~v~IiadGGI  267 (337)
T Consensus       163 ~iT~eqA~lA~~vPmAdDItvEaDSGG----------HTD~~~l~~----LlP~i~~LRd~~~~~~~y~~~iRvGaAGGI  228 (418)
T cd04742         163 KITEEQAELARRVPVADDITVEADSGG----------HTDNRPLSV----LLPTIIRLRDELAARYGYRRPIRVGAAGGI  228 (418)
T ss_pred             CCCHHHHHHHHCCCCCCCEEEECCCCC----------CCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf             988999998827985323677315787----------777864788----989999999999986188888411035887


Q ss_pred             CCHHHHHHHHHHCCCEEHHHHH
Q ss_conf             8889999999838885233479
Q gi|254781020|r  268 RNGVDILKSIILGASLGGLASP  289 (337)
Q Consensus       268 r~g~Dv~kAlalGAdaV~iGr~  289 (337)
T Consensus       229 GTP~aaaAAF~mGA~yVvTGSI  250 (418)
T cd04742         229 GTPEAAAAAFALGADFIVTGSI  250 (418)
T ss_pred             CCHHHHHHHHHCCCCEEEECCH
T ss_conf             9879999999717744895553