HHsearch alignment for GI: 254781020 and conserved domain: cd04743
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.30 E-value=8e-11 Score=82.10 Aligned_cols=194 Identities=13% Similarity=0.048 Sum_probs=101.4
Q ss_pred CCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHH-HHH-HHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf 568685012663343000256999999998099066052022112866-888-999998664012322027521236799
Q gi|254781020|r 56 SFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHN-AIK-SFELRQYAPHTVLISNLGAVQLNYDFG 133 (337)
Q Consensus 56 ~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (337)
T Consensus 2 rYPIiQGgMa~vsd~------a~LAAAVSnAGGLGiIa~~---~~~~e~lr~eI~k~r~~ltdkPFGVNi~~~--~p~~~ 70 (320)
T cd04743 2 RYPIVQGPMTRVSDV------AEFAVAVAEGGGLPFIALA---LMRGEQVKALLEETAELLGDKPWGVGILGF--VDTEL 70 (320)
T ss_pred CCCEECCCCHHHCCC------HHHHHHHHCCCCHHHHCCC---CCCHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCCCC
T ss_conf 888766761142370------8899999818747774337---899899999999999982599844557513--88722
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
T Consensus 71 ~~~~~~vi~e~kv~vv~~ag----------G~P------~~~~~Lk-~aGikvi~----~V~Sv~lAk~~~~~GaDavIa 129 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAG----------GRP------DQARALE-AIGISTYL----HVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred HHHHHHHHHCCCCCEEEECC----------CCC------HHHHHHH-HCCCEEEE----ECCCHHHHHHHHHCCCCEEEE
T ss_conf 57888888616998999568----------890------7879999-86997999----779999999999849999999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHCCC--------
Q ss_conf 588886510012310234432324431063468-899999--852289879972988888999999983888--------
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMA--RPYCNEAQFIASGGLRNGVDILKSIILGAS-------- 282 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~--~~~~~~v~IiadGGIr~g~Dv~kAlalGAd-------- 282 (337)
T Consensus 130 EG~EaGGHi--------G-~~~Tm~---Lvpqvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~~ 197 (320)
T cd04743 130 EGRECGGHV--------G-PRSSFV---LWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKV 197 (320)
T ss_pred ECCCCCCCC--------C-CCCHHH---HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCC
T ss_conf 574576776--------7-530134---0598988986035665567874899767456189999998388422315622
Q ss_pred EEHHHHHHHHH
Q ss_conf 52334799998
Q gi|254781020|r 283 LGGLASPFLKP 293 (337)
Q Consensus 283 aV~iGr~~l~~ 293 (337)
T Consensus 198 GVqmGTrfl~t 208 (320)
T cd04743 198 GVLMGTAYLFT 208 (320)
T ss_pred EEEEECHHHCC
T ss_conf 27860441101