HHsearch alignment for GI: 254781020 and conserved domain: pfam04481
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=97.46 E-value=0.007 Score=35.34 Aligned_cols=143 Identities=16% Similarity=0.053 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHHHHHHCCCC
Q ss_conf 99998776508985762532035665206885-2430799999999873997178504786688----999999976997
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-NFADLSSKIALLSSAMDVPLLLKEVGCGLSS----MDIELGLKSGIR 209 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~----~~~~~a~~aGad 209 (337)
T Consensus 72 ~~f~~aV-~AGA~lvEIGN---fDsFY~qGr~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaD 147 (243)
T pfam04481 72 ELLYEAV-LAGADLVEIGN---FDSFYKQGRVLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAKQLESLGID 147 (243)
T ss_pred HHHHHHH-HHCCCEEEECC---HHHHHHCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8889999-82787898645---3647654766449999999999997689984477457635678999999999981887
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 99945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 210 YFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 210 ~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
T Consensus 148 iIQT--EGgtss~p~------~~g-~~glIekaapTLAaay~IS~-~v~vPVlcASGlS~-vT~PmAiaaGAsGVGVGSa 216 (243)
T pfam04481 148 LIQT--EGKITSISK------NHC-VNDLIEKSASTLASTYEISK-HVQLPVICASGLSD-VTVPLAFSYGASGIGIGSA 216 (243)
T ss_pred EEEC--CCCCCCCCC------CCC-HHHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCH-HHHHHHHHCCCCCCCHHHH
T ss_conf 7872--898777888------842-57779887588999999986-17876675467642-1478899748771006577
Q ss_pred HHH
Q ss_conf 999
Q gi|254781020|r 290 FLK 292 (337)
Q Consensus 290 ~l~ 292 (337)
T Consensus 217 vn~ 219 (243)
T pfam04481 217 VSK 219 (243)
T ss_pred HHH
T ss_conf 650