HHsearch alignment for GI: 254781020 and conserved domain: pfam04898
>pfam04898 Glu_syn_central Glutamate synthase central domain. The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP.
Probab=97.86 E-value=0.00019 Score=44.57 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=81.5
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH------HHHCCCCEE-EECCCCCCH
Q ss_conf 9999999769979994588886510012310234432324431063468899999------852289879-972988888
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA------RPYCNEAQF-IASGGLRNG 270 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~------~~~~~~v~I-iadGGIr~g 270 (337)
T Consensus 147 ~eA~~AV~~G~~ilILSDr~~------------~~------~~~~IP~LLAvsaVHh~Lir~glR~~~sIVVeSge~re~ 208 (288)
T pfam04898 147 EEAEEAVRSGATIIVLSDRNL------------DE------ERVAIPALLAVGAVHHHLIRKGLRTKVSLVVETGEAREV 208 (288)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------CC------CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf 999999985998899468888------------86------534431899999999999974865455168873442458
Q ss_pred HHHHHHHHHCCCEEHHHHHHHH-H-----H-------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 9999999838885233479999-8-----4-------146689999999999999999998089857896149600
Q gi|254781020|r 271 VDILKSIILGASLGGLASPFLK-P-----A-------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTAL 333 (337)
Q Consensus 271 ~Dv~kAlalGAdaV~iGr~~l~-~-----~-------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 333 (337)
T Consensus 209 Hh~A~LiGyGA~AV~---PYLa~eti~~~~~~~~~~~~~~~~~~~ny~kai~kGllKImSKMGIStl~SY~GaqiF 281 (288)
T pfam04898 209 HHFAVLIGYGASAIN---PYLAYETIRDLHRRGLLKELSLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQIF 281 (288)
T ss_pred HHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHH
T ss_conf 787888737740017---7999999999997489889999999999999998448999830127677515560130