BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate
isomerase [Candidatus Liberibacter asiaticus str. psy62]
         (337 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 337

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL 60
           MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL
Sbjct: 1   MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL 60

Query: 61  ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI 120
           ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI
Sbjct: 61  ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI 120

Query: 121 SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS 180
           SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS
Sbjct: 121 SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS 180

Query: 181 AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240
           AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD
Sbjct: 181 AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240

Query: 241 WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA 300
           WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA
Sbjct: 241 WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA 300

Query: 301 VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ 337
           VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ
Sbjct: 301 VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ 337


>gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 337

 Score = 32.0 bits (71), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 12  IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKM 71
           I    P I +N+    +W  I+  +PE S  E    V F+ +  S   + S      N+M
Sbjct: 187 IYINPPQIIKNETLVGEWWAINTGMPESSTGEC---VSFVEQHFSQSSIWSEFNAVTNEM 243

Query: 72  IERINRNLAIAAEKTKVAMAV 92
           +E I +     AEKT  ++ V
Sbjct: 244 MENIQKK---DAEKTYKSVRV 261


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 24.3 bits (51), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 276 SIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFL 318
           S++L   +G   +  L+  + ++D V+   + LRKE +VS F+
Sbjct: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFV 288


>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 22.7 bits (47), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214
            D  +K+ L    +D+P+  KE   G S +DI    K+GI  +D A
Sbjct: 2   TDKFAKLHLGHEEIDLPI--KEGSLGSSVLDISFLHKNGIFTYDPA 45


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 22.7 bits (47), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 43  EVDPSVEF-LGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQR 96
           EV P     + K++ FP+L+ +  GG         R + IA  +  ++ A+   R
Sbjct: 136 EVYPHTAMPIAKEIGFPVLVKASAGGG-------GRGMRIAYSENDLSEAIDQAR 183


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,785
Number of Sequences: 1233
Number of extensions: 8894
Number of successful extensions: 33
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 337
length of database: 328,796
effective HSP length: 74
effective length of query: 263
effective length of database: 237,554
effective search space: 62476702
effective search space used: 62476702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)