Query gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 163 No_of_seqs 116 out of 671 Neff 6.7 Searched_HMMs 33803 Date Wed Jun 1 21:33:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781022.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ah7_A Phospholipase C; phosp 56.6 9.4 0.00028 17.4 2.8 21 103-123 108-128 (245) 2 >2wxu_A Phospholipase C; cytol 36.7 26 0.00077 15.0 3.0 25 102-126 115-139 (250) 3 >1olp_A Alpha-toxin; zinc phos 32.5 31 0.0009 14.6 2.5 20 104-123 117-136 (250) 4 >3hr1_A CAMP and CAMP-inhibite 9.6 1.1E+02 0.0032 11.7 1.6 16 35-50 74-89 (156) 5 >3btp_A Single-strand DNA-bind 8.7 75 0.0022 12.5 -0.3 17 120-136 207-223 (341) 6 >2our_A CAMP and CAMP-inhibite 7.3 1.4E+02 0.004 11.1 1.6 15 36-50 109-123 (190) 7 >3bos_A Putative DNA replicati 6.3 1.5E+02 0.0046 10.8 1.5 16 2-17 63-78 (175) 8 >2w58_A DNAI, primosome compon 6.2 1.6E+02 0.0046 10.8 2.2 15 2-16 65-79 (202) 9 >2hpi_A DNA polymerase III alp 5.8 1.6E+02 0.0046 10.8 0.2 5 44-48 11-15 (173) 10 >3g4g_A DPDE3, PDE43, CAMP-spe 5.7 1.7E+02 0.005 10.6 1.6 17 35-51 192-208 (324) No 1 >>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} (A:) Probab=56.57 E-value=9.4 Score=17.35 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999998513388 Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTG 123 (163) Q Consensus 103 ~~~~~lG~~sHll~D~lT~~G 123 (163) ...+.+|+.+|.+.|+.+++= T Consensus 108 ~a~f~LG~a~Hyi~Dl~~P~H 128 (245) T 1ah7_A 108 QAFFYLGLSLHYLGDVNQPMH 128 (245) T ss_dssp HHHHHHHHHHHHHHHHTSTTT T ss_pred HHHHHHHHHHHHHCCCCCCCC T ss_conf 999999999999703788876 No 2 >>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca and membrane binding, gangrene determinant, zinc, toxin, calcium; 1.80A {Clostridium perfringens} PDB: 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A (A:1-250) Probab=36.67 E-value=26 Score=14.98 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999999998513388803 Q gi|254781022|r 102 LQDALIIGYVSHLVADVLTPTGIPL 126 (163) Q Consensus 102 ~~~~~~lG~~sHll~D~lT~~Gv~l 126 (163) -.....+|..+|.+.|+..++=..- T Consensus 115 ~~a~~~LG~a~HYi~Dl~~P~Ha~~ 139 (250) T 2wxu_A 115 KQATFYLGEAMHYFGDIDTPYHPAN 139 (250) T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTTT T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999998788887503787766666 No 3 >>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} (A:1-250) Probab=32.53 E-value=31 Score=14.60 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999998513388 Q gi|254781022|r 104 DALIIGYVSHLVADVLTPTG 123 (163) Q Consensus 104 ~~~~lG~~sHll~D~lT~~G 123 (163) ..+.+|+++|+++|+-.+.= T Consensus 117 a~~~Lg~l~H~vgDihqPlH 136 (250) T 1olp_A 117 AAWYLGQGMHYFGDLNTPYH 136 (250) T ss_dssp HHHHHHHHHHHHHHHTSHHH T ss_pred HHHHHHHHHHHHHCCCCCCC T ss_conf 99999888788742788765 No 4 >>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* (A:66-221) Probab=9.65 E-value=1.1e+02 Score=11.67 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=11.2 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 9999999833600455 Q gi|254781022|r 35 VLGALLSCLLPDIDHP 50 (163) Q Consensus 35 l~~~~~gsllPDiD~~ 50 (163) ..+.+++|+.-|+||| T Consensus 74 ~~all~Aal~HDi~Hp 89 (156) T 3hr1_A 74 RKGLLIACLCHDLDHR 89 (156) T ss_dssp HHHHHHHHHHTTTTCC T ss_pred HHHHHHHHHHCCCCCC T ss_conf 9999999996057999 No 5 >>3btp_A Single-strand DNA-binding protein; TIM barrel, unique topology, novel fold, structural genomics, israel structural proteomics center, ISPC; 2.30A {Agrobacterium tumefaciens str} (A:1-341) Probab=8.68 E-value=75 Score=12.52 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.6 Q ss_pred CCCCCCCCCCCCCCEEE Q ss_conf 33888031417864687 Q gi|254781022|r 120 TPTGIPLLWPYHWRFCL 136 (163) Q Consensus 120 T~~Gv~ll~Pfs~r~~~ 136 (163) ...|+..||--.+++++ T Consensus 207 gitGT~ifyqtdknikL 223 (341) T 3btp_A 207 GITGTDIFYQTDKNIKL 223 (341) T ss_dssp TCCCCCCCCCBCTTCCC T ss_pred CCCCCEEEEECCCCCCC T ss_conf 87631357644888645 No 6 >>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* (A:1-190) Probab=7.34 E-value=1.4e+02 Score=11.11 Aligned_cols=15 Identities=47% Similarity=0.919 Sum_probs=8.5 Q ss_pred HHHHHHHHCCCCCCC Q ss_conf 999999833600455 Q gi|254781022|r 36 LGALLSCLLPDIDHP 50 (163) Q Consensus 36 ~~~~~gsllPDiD~~ 50 (163) .+.+++|+.-|+||| T Consensus 109 ~alliAal~HD~~Hp 123 (190) T 2our_A 109 KGLLIACLCHDLDHR 123 (190) T ss_dssp HHHHHHHHHTTTTCC T ss_pred HHHHHHHHHHHCCCC T ss_conf 999999998344899 No 7 >>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175) Probab=6.33 E-value=1.5e+02 Score=10.82 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 7522899999999999 Q gi|254781022|r 2 TYEGHCIFALASVILA 17 (163) Q Consensus 2 ~~~tH~~~g~a~~~~~ 17 (163) +||||++.++|-.+.. T Consensus 63 tGKT~la~aia~~l~~ 78 (175) T 3bos_A 63 SGRTHLIHAACARANE 78 (175) T ss_dssp SSHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 6688999999998532 No 8 >>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:) Probab=6.21 E-value=1.6e+02 Score=10.78 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 752289999999999 Q gi|254781022|r 2 TYEGHCIFALASVIL 16 (163) Q Consensus 2 ~~~tH~~~g~a~~~~ 16 (163) +||||++.+++-.+. T Consensus 65 ~GKThLa~ai~~~~~ 79 (202) T 2w58_A 65 VGKTYLLAAIANELA 79 (202) T ss_dssp SSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 978999999999975 No 9 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:451-623) Probab=5.76 E-value=1.6e+02 Score=10.80 Aligned_cols=5 Identities=80% Similarity=1.584 Sum_probs=0.0 Q ss_pred CCCCC Q ss_conf 36004 Q gi|254781022|r 44 LPDID 48 (163) Q Consensus 44 lPDiD 48 (163) +|||| T Consensus 11 ~PDID 15 (173) T 2hpi_A 11 MPDID 15 (173) T ss_dssp CCCCE T ss_pred CCCCC T ss_conf 56766 No 10 >>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:1-324) Probab=5.71 E-value=1.7e+02 Score=10.62 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCCCH Q ss_conf 99999998336004553 Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163) Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163) ..+.+++|+.-|+|||. T Consensus 192 ~~alliAal~HDv~HpG 208 (324) T 3g4g_A 192 ILAAIFASAIHDVDHPG 208 (324) T ss_dssp HHHHHHHHHHTTTTCCS T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 99999999981168999 Done!