Query gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 163
No_of_seqs 116 out of 671
Neff 6.7
Searched_HMMs 33803
Date Wed Jun 1 21:33:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781022.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ah7_A Phospholipase C; phosp 56.6 9.4 0.00028 17.4 2.8 21 103-123 108-128 (245)
2 >2wxu_A Phospholipase C; cytol 36.7 26 0.00077 15.0 3.0 25 102-126 115-139 (250)
3 >1olp_A Alpha-toxin; zinc phos 32.5 31 0.0009 14.6 2.5 20 104-123 117-136 (250)
4 >3hr1_A CAMP and CAMP-inhibite 9.6 1.1E+02 0.0032 11.7 1.6 16 35-50 74-89 (156)
5 >3btp_A Single-strand DNA-bind 8.7 75 0.0022 12.5 -0.3 17 120-136 207-223 (341)
6 >2our_A CAMP and CAMP-inhibite 7.3 1.4E+02 0.004 11.1 1.6 15 36-50 109-123 (190)
7 >3bos_A Putative DNA replicati 6.3 1.5E+02 0.0046 10.8 1.5 16 2-17 63-78 (175)
8 >2w58_A DNAI, primosome compon 6.2 1.6E+02 0.0046 10.8 2.2 15 2-16 65-79 (202)
9 >2hpi_A DNA polymerase III alp 5.8 1.6E+02 0.0046 10.8 0.2 5 44-48 11-15 (173)
10 >3g4g_A DPDE3, PDE43, CAMP-spe 5.7 1.7E+02 0.005 10.6 1.6 17 35-51 192-208 (324)
No 1
>>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} (A:)
Probab=56.57 E-value=9.4 Score=17.35 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999998513388
Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTG 123 (163)
Q Consensus 103 ~~~~~lG~~sHll~D~lT~~G 123 (163)
...+.+|+.+|.+.|+.+++=
T Consensus 108 ~a~f~LG~a~Hyi~Dl~~P~H 128 (245)
T 1ah7_A 108 QAFFYLGLSLHYLGDVNQPMH 128 (245)
T ss_dssp HHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999703788876
No 2
>>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca and membrane binding, gangrene determinant, zinc, toxin, calcium; 1.80A {Clostridium perfringens} PDB: 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A (A:1-250)
Probab=36.67 E-value=26 Score=14.98 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999998513388803
Q gi|254781022|r 102 LQDALIIGYVSHLVADVLTPTGIPL 126 (163)
Q Consensus 102 ~~~~~~lG~~sHll~D~lT~~Gv~l 126 (163)
-.....+|..+|.+.|+..++=..-
T Consensus 115 ~~a~~~LG~a~HYi~Dl~~P~Ha~~ 139 (250)
T 2wxu_A 115 KQATFYLGEAMHYFGDIDTPYHPAN 139 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999998788887503787766666
No 3
>>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} (A:1-250)
Probab=32.53 E-value=31 Score=14.60 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999998513388
Q gi|254781022|r 104 DALIIGYVSHLVADVLTPTG 123 (163)
Q Consensus 104 ~~~~lG~~sHll~D~lT~~G 123 (163)
..+.+|+++|+++|+-.+.=
T Consensus 117 a~~~Lg~l~H~vgDihqPlH 136 (250)
T 1olp_A 117 AAWYLGQGMHYFGDLNTPYH 136 (250)
T ss_dssp HHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHCCCCCCC
T ss_conf 99999888788742788765
No 4
>>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* (A:66-221)
Probab=9.65 E-value=1.1e+02 Score=11.67 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=11.2
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 9999999833600455
Q gi|254781022|r 35 VLGALLSCLLPDIDHP 50 (163)
Q Consensus 35 l~~~~~gsllPDiD~~ 50 (163)
..+.+++|+.-|+|||
T Consensus 74 ~~all~Aal~HDi~Hp 89 (156)
T 3hr1_A 74 RKGLLIACLCHDLDHR 89 (156)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999996057999
No 5
>>3btp_A Single-strand DNA-binding protein; TIM barrel, unique topology, novel fold, structural genomics, israel structural proteomics center, ISPC; 2.30A {Agrobacterium tumefaciens str} (A:1-341)
Probab=8.68 E-value=75 Score=12.52 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCEEE
Q ss_conf 33888031417864687
Q gi|254781022|r 120 TPTGIPLLWPYHWRFCL 136 (163)
Q Consensus 120 T~~Gv~ll~Pfs~r~~~ 136 (163)
...|+..||--.+++++
T Consensus 207 gitGT~ifyqtdknikL 223 (341)
T 3btp_A 207 GITGTDIFYQTDKNIKL 223 (341)
T ss_dssp TCCCCCCCCCBCTTCCC
T ss_pred CCCCCEEEEECCCCCCC
T ss_conf 87631357644888645
No 6
>>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* (A:1-190)
Probab=7.34 E-value=1.4e+02 Score=11.11 Aligned_cols=15 Identities=47% Similarity=0.919 Sum_probs=8.5
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999999833600455
Q gi|254781022|r 36 LGALLSCLLPDIDHP 50 (163)
Q Consensus 36 ~~~~~gsllPDiD~~ 50 (163)
.+.+++|+.-|+|||
T Consensus 109 ~alliAal~HD~~Hp 123 (190)
T 2our_A 109 KGLLIACLCHDLDHR 123 (190)
T ss_dssp HHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999998344899
No 7
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
Probab=6.33 E-value=1.5e+02 Score=10.82 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7522899999999999
Q gi|254781022|r 2 TYEGHCIFALASVILA 17 (163)
Q Consensus 2 ~~~tH~~~g~a~~~~~ 17 (163)
+||||++.++|-.+..
T Consensus 63 tGKT~la~aia~~l~~ 78 (175)
T 3bos_A 63 SGRTHLIHAACARANE 78 (175)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 6688999999998532
No 8
>>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:)
Probab=6.21 E-value=1.6e+02 Score=10.78 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 752289999999999
Q gi|254781022|r 2 TYEGHCIFALASVIL 16 (163)
Q Consensus 2 ~~~tH~~~g~a~~~~ 16 (163)
+||||++.+++-.+.
T Consensus 65 ~GKThLa~ai~~~~~ 79 (202)
T 2w58_A 65 VGKTYLLAAIANELA 79 (202)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 978999999999975
No 9
>>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:451-623)
Probab=5.76 E-value=1.6e+02 Score=10.80 Aligned_cols=5 Identities=80% Similarity=1.584 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 36004
Q gi|254781022|r 44 LPDID 48 (163)
Q Consensus 44 lPDiD 48 (163)
+||||
T Consensus 11 ~PDID 15 (173)
T 2hpi_A 11 MPDID 15 (173)
T ss_dssp CCCCE
T ss_pred CCCCC
T ss_conf 56766
No 10
>>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:1-324)
Probab=5.71 E-value=1.7e+02 Score=10.62 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.-|+|||.
T Consensus 192 ~~alliAal~HDv~HpG 208 (324)
T 3g4g_A 192 ILAAIFASAIHDVDHPG 208 (324)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999981168999
Done!