Query gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 163
No_of_seqs 116 out of 671
Neff 6.7
Searched_HMMs 13730
Date Wed Jun 1 11:13:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781022.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ca1a1 a.124.1.1 (A:1-249) Al 44.5 7.8 0.00057 15.7 2.8 22 104-125 117-138 (249)
2 d1olpa1 a.124.1.1 (A:1-249) Al 38.3 7.6 0.00056 15.7 2.0 29 103-131 116-148 (249)
3 d1ah7a_ a.124.1.1 (A:) Bacteri 10.7 40 0.0029 11.9 2.8 22 104-125 109-130 (245)
4 d2b0ja2 c.2.1.6 (A:1-242) 5,10 5.0 77 0.0056 10.4 0.9 45 3-49 11-59 (242)
5 d1l8qa2 c.37.1.20 (A:77-289) C 4.1 89 0.0065 10.0 1.5 15 2-16 47-61 (213)
6 d1ciia1 f.1.1.1 (A:451-624) Co 3.0 1.3E+02 0.0096 9.1 1.3 19 100-118 147-165 (174)
7 d3dy8a1 a.211.1.2 (A:182-505) 2.7 1.5E+02 0.011 8.8 1.6 17 35-51 101-117 (324)
8 d1y2ka1 a.211.1.2 (A:86-411) C 2.7 1.5E+02 0.011 8.7 1.6 17 35-51 105-121 (326)
9 d2crna1 a.5.2.1 (A:8-58) Suppr 2.6 1.6E+02 0.012 8.6 0.4 6 45-50 45-50 (51)
10 d1tbfa_ a.211.1.2 (A:) cGMP-sp 2.4 1.7E+02 0.012 8.5 1.6 17 35-51 110-126 (326)
No 1
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}
Probab=44.45 E-value=7.8 Score=15.69 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999851338880
Q gi|254781022|r 104 DALIIGYVSHLVADVLTPTGIP 125 (163)
Q Consensus 104 ~~~~lG~~sHll~D~lT~~Gv~ 125 (163)
..+.+|..+|.+.|+.+++=+.
T Consensus 117 a~~~LG~a~Hy~~D~~~P~Ha~ 138 (249)
T d1ca1a1 117 ATFYLGEAMHYFGDIDTPYHPA 138 (249)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999878999873278865434
No 2
>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}
Probab=38.33 E-value=7.6 Score=15.73 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCC----CCCCCCCC
Q ss_conf 999999999999998513388----80314178
Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTG----IPLLWPYH 131 (163)
Q Consensus 103 ~~~~~lG~~sHll~D~lT~~G----v~ll~Pfs 131 (163)
-..+.+|+.+|.+.|+.+++= +....|..
T Consensus 116 ~a~~~LG~a~Hy~~D~~qP~HaaN~t~v~~~~H 148 (249)
T d1olpa1 116 KAAWYLGQGMHYFGDLNTPYHAANVTAVDSPGH 148 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHTTCCTTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 999998767577623788754333545566319
No 3
>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}
Probab=10.73 E-value=40 Score=11.89 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999851338880
Q gi|254781022|r 104 DALIIGYVSHLVADVLTPTGIP 125 (163)
Q Consensus 104 ~~~~lG~~sHll~D~lT~~Gv~ 125 (163)
..+.+|.++|.++|+-.+.=+.
T Consensus 109 ~~~~l~~~~h~~~d~~qP~H~~ 130 (245)
T d1ah7a_ 109 AFFYLGLSLHYLGDVNQPMHAA 130 (245)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999972068886544
No 4
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.98 E-value=77 Score=10.35 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=20.4
Q ss_pred CHHHHHHHHHH----HHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 52289999999----999964113200044220899999999983360045
Q gi|254781022|r 3 YEGHCIFALAS----VILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDH 49 (163)
Q Consensus 3 ~~tH~~~g~a~----~~~~~~~~~~~~~~~~~~~~~l~~~~~gsllPDiD~ 49 (163)
|+||...|+.. ...+.. ...+..... -...+.|+.++.+-++||+
T Consensus 11 ~~~~~a~gi~~f~~~~~~~~~-~~~~~~a~~-~~~~~~gagl~~~~~gi~~ 59 (242)
T d2b0ja2 11 YRTHAAAGITNFMRACEVAKE-VGKPEIALT-HSSITYGAELLHLVPDVKE 59 (242)
T ss_dssp SHHHHHHSSCCCHHHHHHHHH-HTCGGGGGC-CHHHHHHHHHHHHCTTCCE
T ss_pred CCCHHHHCCHHHHHHHHHHCC-CCCCCCCEE-EEEEEEEECHHHHHHCHHH
T ss_conf 311666430788988863024-788752022-2344662007765205466
No 5
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=4.14 E-value=89 Score=10.00 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 752289999999999
Q gi|254781022|r 2 TYEGHCIFALASVIL 16 (163)
Q Consensus 2 ~~~tH~~~g~a~~~~ 16 (163)
.||||++-+++-...
T Consensus 47 ~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 47 TGKTHLLQAAGNEAK 61 (213)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 839999999998744
No 6
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=1.3e+02 Score=9.07 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999985
Q gi|254781022|r 100 QGLQDALIIGYVSHLVADV 118 (163)
Q Consensus 100 ~~~~~~~~lG~~sHll~D~ 118 (163)
..+..++..|+++-+.-|-
T Consensus 147 gi~g~ali~~~v~a~Idd~ 165 (174)
T d1ciia1 147 GIIGYGLLMAVTGALIDES 165 (174)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHCHH
T ss_conf 9999999999999985779
No 7
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.69 E-value=1.5e+02 Score=8.77 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.=|+|||.
T Consensus 101 ~~alliAal~HD~~HpG 117 (324)
T d3dy8a1 101 ILILMTAAICHDLDHPG 117 (324)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999997268998
No 8
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.66 E-value=1.5e+02 Score=8.73 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=13.1
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.=|+|||.
T Consensus 105 ~~alliAal~HDv~HpG 121 (326)
T d1y2ka1 105 ILAAIFASAIHDVDHPG 121 (326)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999986458789
No 9
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.55 E-value=1.6e+02 Score=8.62 Aligned_cols=6 Identities=50% Similarity=1.309 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 600455
Q gi|254781022|r 45 PDIDHP 50 (163)
Q Consensus 45 PDiD~~ 50 (163)
||+|.|
T Consensus 45 ~d~d~P 50 (51)
T d2crna1 45 PSLDDP 50 (51)
T ss_dssp TTSCCS
T ss_pred CCCCCC
T ss_conf 675788
No 10
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=1.7e+02 Score=8.50 Aligned_cols=17 Identities=41% Similarity=0.792 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.=|+|||.
T Consensus 110 ~~alliAal~HDv~HpG 126 (326)
T d1tbfa_ 110 ILALLIAALSHDLDHPG 126 (326)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999998875168998
Done!