RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781022|ref|YP_003065435.1| hypothetical protein
CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)



>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein
           antibody complex, toxin/immune system complex; 2.61A
           {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873)
          Length = 454

 Score = 33.6 bits (77), Expect = 0.015
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 74  FTHSILAVILYKWLIHHFFPSELISY--QGLQDALIIGYVSHLVAD 117
            T+S+   +L    ++ FF S+ +    +  + A+ +G+V  LV D
Sbjct: 148 LTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQLVYD 193


>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc,
           metalloprotease, transmembrane, hydrolase; 1.90A
           {Clostridium botulinum} (A:535-607,A:707-786)
          Length = 153

 Score = 32.9 bits (75), Expect = 0.021
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 74  FTHSILAVILYKWLIHHFFPSELISY--QGLQDALIIGYVSHLVADVLTPT 122
            T S    +L+   ++ FF  + I    + ++  L  G+V  +V D +   
Sbjct: 20  LTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFAGWVKQIVNDFVIEA 70


>2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain;
           metalloprotease, membrane domain, protein engineering,
           metal-binding, transmembrane; 2.59A {Clostridium
           botulinum} (B:)
          Length = 431

 Score = 32.8 bits (75), Expect = 0.024
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 74  FTHSILAVILYKWLIHHFFPSELISY--QGLQDALIIGYVSHLVAD----------VLTP 121
            T+S+   +L    ++ FF S+ +    +  + A+ +G+V  LV D              
Sbjct: 122 LTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQLVYDFTDETSEVSTTDKI 181

Query: 122 TGIPLLWPY 130
             I ++ PY
Sbjct: 182 ADITIIIPY 190


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 28.2 bits (63), Expect = 0.59
 Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 6/22 (27%)

Query: 91  FFPSE-LIS---YQGL--QDAL 106
               E L+    Y+G+  Q A+
Sbjct: 5   VMSIESLVEVVFYRGMTMQVAV 26


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,309,037
Number of extensions: 53416
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 12
Length of query: 163
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 81
Effective length of database: 2,184,039
Effective search space: 176907159
Effective search space used: 176907159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.1 bits)