RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781022|ref|YP_003065435.1| hypothetical protein
CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.21
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 49/107 (45%)

Query: 45  PDIDH----PRSF--ISKRFKTLSLLTSCISSH-------------RGFT-HS---ILAV 81
           PD D+    P S   I      + L    +++              +G T HS   + AV
Sbjct: 226 PDKDYLLSIPISCPLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281

Query: 82  IL---------YK----------WL---IHHFFPSELISYQGLQDAL 106
            +         +           ++    +  +P+  +    L+D+L
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328



 Score = 27.2 bits (60), Expect = 1.9
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 39/89 (43%)

Query: 52  SFISKRFKTLSLLTSCISSHRGFTHSILAVILYKWLI---HHFFPSEL---------ISY 99
              S R   L+L      SH    H +        L+     F  S+L            
Sbjct: 2   DAYSTR--PLTL------SHGSLEHVL--------LVPTASFFIASQLQEQFNKILPEPT 45

Query: 100 QGL-QD----------ALIIGYVSHLVAD 117
           +G   D             +GYVS LV  
Sbjct: 46  EGFAADDEPTTPAELVGKFLGYVSSLVEP 74


>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
           1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
           1ro9_A* 1ror_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A*
           1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A*
           3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* 3g58_A* ...
          Length = 377

 Score = 25.7 bits (56), Expect = 5.7
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 6   HCI-FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR---SFISKRFKTL 61
           H    A ++ +L       + FTD E    +L A+ +  + D+DHP     F+      L
Sbjct: 87  HAADVAQSTHVLLSTPALDAVFTDLE----ILAAIFAAAIHDVDHPGVSNQFLINTNSEL 142

Query: 62  SLLTSCIS 69
           +L+ +  S
Sbjct: 143 ALMYNDES 150


>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca
           and membrane binding, gangrene determinant, zinc, toxin,
           calcium; 1.80A {Clostridium perfringens} PDB: 2wxt_A
           1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
          Length = 370

 Score = 25.3 bits (55), Expect = 7.3
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 4/30 (13%)

Query: 109 GYVSHLVADVLTP----TGIPLLWPYHWRF 134
           G   H   D+ TP        +    H +F
Sbjct: 122 GEAMHYFGDIDTPYHPANVTAVDSAGHVKF 151


>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
           PDE4D, UCR2, alternative splicing, cytoplasm,
           cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
           sapiens} PDB: 3g45_A*
          Length = 421

 Score = 25.0 bits (54), Expect = 7.7
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 6   HCI-FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR---SFISKRFKTL 61
           H      ++ +L       + FTD E    +L A+ +  + D+DHP     F+      L
Sbjct: 166 HAADVVQSTHVLLSTPALEAVFTDLE----ILAAIFASAIHDVDHPGVSNQFLINTNSEL 221

Query: 62  SLLTSCIS 69
           +L+ +  S
Sbjct: 222 ALMYNDSS 229


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,463,115
Number of extensions: 61053
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 14
Length of query: 163
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 78
Effective length of database: 3,632,490
Effective search space: 283334220
Effective search space used: 283334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.5 bits)