RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62] (163 letters) >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 312 Score = 25.3 bits (54), Expect = 2.9 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Query: 9 FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR 51 F A+ +L L T++E G+++ + L P +P Sbjct: 15 FMNAAGVLCTTEEDLRRMTESESGSLIGKSC--TLAPRTGNPE 55 >d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Score = 25.1 bits (55), Expect = 3.6 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 16 LAKKVNFLSSFTDAEWGTVVL---GALLSCLLPDIDHPRSFISKRFKTLSLLTSCISS 70 + KK LS T + +V+ G + + P + I + + +L+ +C+++ Sbjct: 29 IMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEP----IVTQQEGRNLIQACLNA 82 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.145 0.478 Gapped Lambda K H 0.267 0.0441 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 642,153 Number of extensions: 27442 Number of successful extensions: 65 Number of sequences better than 10.0: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 6 Length of query: 163 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 84 Effective length of database: 1,322,926 Effective search space: 111125784 Effective search space used: 111125784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 49 (23.4 bits)