RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781022|ref|YP_003065435.1| hypothetical protein
CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)



>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase
          {Trypanosoma brucei [TaxId: 5691]}
          Length = 312

 Score = 25.3 bits (54), Expect = 2.9
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 9  FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR 51
          F  A+ +L      L   T++E G+++  +    L P   +P 
Sbjct: 15 FMNAAGVLCTTEEDLRRMTESESGSLIGKSC--TLAPRTGNPE 55


>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 25.1 bits (55), Expect = 3.6
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 16 LAKKVNFLSSFTDAEWGTVVL---GALLSCLLPDIDHPRSFISKRFKTLSLLTSCISS 70
          + KK   LS  T  +   +V+   G + +   P  +     I  + +  +L+ +C+++
Sbjct: 29 IMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEP----IVTQQEGRNLIQACLNA 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,153
Number of extensions: 27442
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 6
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.4 bits)