Query gi|254781023|ref|YP_003065436.1| hypothetical protein CLIBASIA_04625 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 34 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:35:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781023.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3e8v_A Possible transglutamina 5.4 94 0.0039 14.9 -0.4 18 4-21 43-60 (82) 2 3la7_A Global nitrogen regulat 4.5 1.7E+02 0.007 13.8 0.4 21 12-32 31-53 (243) 3 3lvf_P GAPDH 1, glyceraldehyde 4.4 2.1E+02 0.0088 13.3 0.9 21 11-31 195-217 (338) 4 2g82_O GAPDH, glyceraldehyde-3 3.9 2E+02 0.0086 13.3 0.4 28 3-30 181-210 (331) 5 3mmp_G RNA-directed RNA polyme 3.7 2.6E+02 0.011 12.9 0.8 18 2-19 381-398 (589) 6 2pw8_I Lepirudin, hirudin vari 2.5 3.5E+02 0.015 12.3 0.4 18 3-20 45-62 (65) 7 1gad_O D-glyceraldehyde-3-phos 2.3 4.3E+02 0.018 11.8 0.7 28 3-30 181-211 (330) 8 3d4r_A Domain of unknown funct 2.3 3.4E+02 0.014 12.3 0.2 11 6-16 130-140 (169) 9 1l9v_A Rotavirus-NSP2; alpha/b 2.3 3.5E+02 0.015 12.3 0.2 9 7-15 219-227 (317) 10 2gu0_A Nonstructural protein 2 2.2 3.6E+02 0.015 12.2 0.2 9 7-15 216-224 (312) No 1 >3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} Probab=5.37 E-value=94 Score=14.90 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=13.3 Q ss_pred CCCCCCCCCCHHHHHHCC Q ss_conf 100003765101112104 Q gi|254781023|r 4 QRRITSGKGDFRESATEN 21 (34) Q Consensus 4 qrritsgkgdfresaten 21 (34) +-+++.|+||+.-+|..+ T Consensus 43 ~a~lt~G~Gdmlv~A~k~ 60 (82) T 3e8v_A 43 HASLTAGKGDMLVWASKD 60 (82) T ss_dssp EEEEECCSEEEEEEEEET T ss_pred EEEEEECCCCEEEEEECC T ss_conf 099995587599999859 No 2 >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Probab=4.55 E-value=1.7e+02 Score=13.76 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=14.9 Q ss_pred CCHHHHHHCCCCCCCC--CCCCC Q ss_conf 5101112104886424--67422 Q gi|254781023|r 12 GDFRESATENIPPSIK--GKGEM 32 (34) Q Consensus 12 gdfresatenippsik--gkgem 32 (34) -+||+-+.++.||.|+ .||+. T Consensus 31 ~~~~~l~~~~~~~~i~ty~kge~ 53 (243) T 3la7_A 31 NVFRQMATGAFPPVVETFERNKT 53 (243) T ss_dssp HHHHHHCCSSCCCEEEEECTTCE T ss_pred HHHHHHCCCCCCCCEEEECCCCE T ss_conf 99987320236620379899999 No 3 >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Probab=4.40 E-value=2.1e+02 Score=13.29 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=14.4 Q ss_pred CCCHH--HHHHCCCCCCCCCCCC Q ss_conf 65101--1121048864246742 Q gi|254781023|r 11 KGDFR--ESATENIPPSIKGKGE 31 (34) Q Consensus 11 kgdfr--esatenippsikgkge 31 (34) |.|+| .+|..||-|+-.|-.. T Consensus 195 ~~d~Rr~Raa~~nIIPttTgaak 217 (338) T 3lvf_P 195 KGDKRRARAAAENIIPNSTGAAK 217 (338) T ss_dssp TCCTTTTSCGGGCCEEEECSTTT T ss_pred CCCCCCCCHHHHCCEECCCCHHH T ss_conf 77766651355274226652789 No 4 >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Probab=3.86 E-value=2e+02 Score=13.34 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=17.5 Q ss_pred CCCCCCCCCCCHHH--HHHCCCCCCCCCCC Q ss_conf 31000037651011--12104886424674 Q gi|254781023|r 3 TQRRITSGKGDFRE--SATENIPPSIKGKG 30 (34) Q Consensus 3 tqrritsgkgdfre--satenippsikgkg 30 (34) +|+-+-.-..|||. +|..||-|+..|-. T Consensus 181 ~Q~l~D~~~~d~Rr~Raa~~nIIPtsTgAa 210 (331) T 2g82_O 181 DQRLLDLPHKDLRRARAAAINIIPTTTGAA 210 (331) T ss_dssp TSBSSSCCCSSTTTTSBGGGCCEEECCCHH T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCC T ss_conf 752355777664432545505666667621 No 5 >3mmp_G RNA-directed RNA polymerase beta chain; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Enterobacteria phage qbeta} Probab=3.68 E-value=2.6e+02 Score=12.87 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=12.4 Q ss_pred CCCCCCCCCCCCHHHHHH Q ss_conf 731000037651011121 Q gi|254781023|r 2 KTQRRITSGKGDFRESAT 19 (34) Q Consensus 2 ktqrritsgkgdfresat 19 (34) ++.++-|-.+|-||||.- T Consensus 381 ~~N~kKTF~~G~FRESCG 398 (589) T 3mmp_G 381 TTNTKKTFSEGPFRESCG 398 (589) T ss_dssp CBCGGGCBSSSSEEEETT T ss_pred ECCCCCCCCCCCCHHHHC T ss_conf 037765435676332312 No 6 >2pw8_I Lepirudin, hirudin variant-1; thrombin, sulfotyrosine, hydrolase; HET: TYS; 1.84A {Hirudo medicinalis} PDB: 1hrt_I 2hir_A 5hir_A 4hir_A 6hir_A 3htc_I 4htc_I* 2joo_A 1hic_A Probab=2.46 E-value=3.5e+02 Score=12.25 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=10.3 Q ss_pred CCCCCCCCCCCHHHHHHC Q ss_conf 310000376510111210 Q gi|254781023|r 3 TQRRITSGKGDFRESATE 20 (34) Q Consensus 3 tqrritsgkgdfresate 20 (34) |..+-..+.|||.|-..| T Consensus 45 Tpkpqs~~~gDFeeipee 62 (65) T 2pw8_I 45 TPKPQSHNDGDFEEIPEE 62 (65) T ss_dssp EECCCC---CCCCCCCGG T ss_pred CCCCCCCCCCCCCCCCHH T ss_conf 768755688774528477 No 7 >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Probab=2.31 E-value=4.3e+02 Score=11.83 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=17.4 Q ss_pred CCCCCCC-CCCCHH--HHHHCCCCCCCCCCC Q ss_conf 3100003-765101--112104886424674 Q gi|254781023|r 3 TQRRITS-GKGDFR--ESATENIPPSIKGKG 30 (34) Q Consensus 3 tqrrits-gkgdfr--esatenippsikgkg 30 (34) +|+-+-+ ...|+| .+|..||-|+-.|-. T Consensus 181 ~Q~l~D~~~~~d~Rr~Raa~~niIPt~Tgaa 211 (330) T 1gad_O 181 TQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 211 (330) T ss_dssp TSBSSSCCCSSCGGGGSBTTTCCEEEECCTT T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH T ss_conf 8731237676654445424416652566388 No 8 >3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Probab=2.30 E-value=3.4e+02 Score=12.31 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=6.7 Q ss_pred CCCCCCCCHHH Q ss_conf 00037651011 Q gi|254781023|r 6 RITSGKGDFRE 16 (34) Q Consensus 6 ritsgkgdfre 16 (34) -|+++||+.|- T Consensus 130 ~i~T~KGEVR~ 140 (169) T 3d4r_A 130 TLESKKGDLRY 140 (169) T ss_dssp EEECTTCCEEE T ss_pred EEEECCCCEEE T ss_conf 99826850799 No 9 >1l9v_A Rotavirus-NSP2; alpha/beta protein, HIT-like fold, octamer, two domain protein, viral protein; 2.60A {Simian 11 rotavirus} SCOP: d.13.2.1 d.216.1.1 PDB: 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* Probab=2.29 E-value=3.5e+02 Score=12.25 Aligned_cols=9 Identities=67% Similarity=1.217 Sum_probs=0.0 Q ss_pred CCCCCCCHH Q ss_conf 003765101 Q gi|254781023|r 7 ITSGKGDFR 15 (34) Q Consensus 7 itsgkgdfr 15 (34) ||.|||.+| T Consensus 219 ItHGKgHyR 227 (317) T 1l9v_A 219 ITHGKGHYR 227 (317) T ss_dssp EECSSSSEE T ss_pred EECCCCEEE T ss_conf 961786079 No 10 >2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C} Probab=2.21 E-value=3.6e+02 Score=12.17 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=0.0 Q ss_pred CCCCCCCHH Q ss_conf 003765101 Q gi|254781023|r 7 ITSGKGDFR 15 (34) Q Consensus 7 itsgkgdfr 15 (34) ||.|||.+| T Consensus 216 ItHGkgHyR 224 (312) T 2gu0_A 216 ISHGKRHWR 224 (312) T ss_dssp ECSSSSEEE T ss_pred EECCCCCEE T ss_conf 961776079 Done!