Query gi|254781023|ref|YP_003065436.1| hypothetical protein CLIBASIA_04625 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 34
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:02:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781023.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g82a2 d.81.1.1 (A:149-310) G 5.4 1.2E+02 0.0088 13.3 1.4 27 2-28 32-60 (162)
2 d3cmco2 d.81.1.1 (O:149-312) G 4.6 1.3E+02 0.0095 13.1 1.1 27 2-28 32-60 (163)
3 d1u8fo2 d.81.1.1 (O:152-315) G 4.0 1.2E+02 0.0091 13.2 0.7 29 3-31 33-64 (164)
4 d2bv3a5 d.58.11.1 (A:600-688) 3.2 1.4E+02 0.0099 13.1 0.2 12 5-16 61-72 (89)
5 d2r7ca1 d.13.2.1 (A:144-313) R 3.0 1.4E+02 0.011 12.9 0.2 11 6-16 75-85 (170)
6 d4htci_ g.3.15.2 (I:) Hirudin 2.8 2E+02 0.014 12.3 0.7 19 3-21 45-63 (65)
7 d1dlja3 c.26.3.1 (A:295-402) U 2.7 80 0.0058 14.1 -1.3 23 9-31 27-49 (108)
8 d2dy1a5 d.58.11.1 (A:570-665) 2.3 1.8E+02 0.013 12.5 -0.0 12 5-16 61-72 (96)
9 d1k28d2 b.106.1.1 (D:201-376) 2.3 2.4E+02 0.017 11.9 0.6 12 2-13 61-72 (176)
10 d3chbd_ b.40.2.1 (D:) Cholera 2.3 2.1E+02 0.015 12.2 0.3 10 24-33 29-38 (103)
No 1
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=5.40 E-value=1.2e+02 Score=13.28 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCHHH--HHHCCCCCCCCC
Q ss_conf 731000037651011--121048864246
Q gi|254781023|r 2 KTQRRITSGKGDFRE--SATENIPPSIKG 28 (34)
Q Consensus 2 ktqrritsgkgdfre--satenippsikg 28 (34)
-+|+-+-.-..|||. ||.+||-|..-|
T Consensus 32 ~~Q~l~D~~~~d~rr~Rsa~~niIPt~Tg 60 (162)
T d2g82a2 32 NDQRLLDLPHKDLRRARAAAINIIPTTTG 60 (162)
T ss_dssp TTSBSSSCCCSSTTTTSBGGGCCEEECCC
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 76635778888866666043166766575
No 2
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=4.57 E-value=1.3e+02 Score=13.14 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCHHH--HHHCCCCCCCCC
Q ss_conf 731000037651011--121048864246
Q gi|254781023|r 2 KTQRRITSGKGDFRE--SATENIPPSIKG 28 (34)
Q Consensus 2 ktqrritsgkgdfre--satenippsikg 28 (34)
-+|+-+-.-..|||. +|..||-|+-.|
T Consensus 32 ~~Q~l~D~~~~d~Rr~Raa~~niIPtsTg 60 (163)
T d3cmco2 32 NDQRILDLPHKDLRRARAAAESIIPTTTG 60 (163)
T ss_dssp TTSBSSSCCCSSTTTTSBTTTCCEEEECS
T ss_pred CCCCCCCCCCCCHHCCCHHHHCCCCCCCC
T ss_conf 74657787774200020676177876664
No 3
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=4.04 E-value=1.2e+02 Score=13.23 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=17.1
Q ss_pred CCCCCCC-CCCCHH--HHHHCCCCCCCCCCCC
Q ss_conf 3100003-765101--1121048864246742
Q gi|254781023|r 3 TQRRITS-GKGDFR--ESATENIPPSIKGKGE 31 (34)
Q Consensus 3 tqrrits-gkgdfr--esatenippsikgkge 31 (34)
.|+-+-+ .+.||| .+|.+||-|+--|-..
T Consensus 33 ~Q~l~D~~~~~~~Rr~Raa~~niIPttTgAak 64 (164)
T d1u8fo2 33 TQKTVDGPSGKLWRDGRGALQNIIPASTGAAK 64 (164)
T ss_dssp TSBSSSCCCTTCGGGGSBTTTCCEEEECCTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCHHH
T ss_conf 64311366667653577776731156522889
No 4
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=3.15 E-value=1.4e+02 Score=13.06 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.3
Q ss_pred CCCCCCCCCHHH
Q ss_conf 000037651011
Q gi|254781023|r 5 RRITSGKGDFRE 16 (34)
Q Consensus 5 rritsgkgdfre 16 (34)
|.+|+|+|.|--
T Consensus 61 rs~T~G~g~~~~ 72 (89)
T d2bv3a5 61 RSKTQGRGSFVM 72 (89)
T ss_dssp HHTTTTCCEEEE
T ss_pred HHCCCCCEEEEE
T ss_conf 312898788999
No 5
>d2r7ca1 d.13.2.1 (A:144-313) Rotavirus NSP2 fragment, C-terminal domain {Simian 11 rotavirus [TaxId: 10923]}
Probab=3.02 E-value=1.4e+02 Score=12.93 Aligned_cols=11 Identities=55% Similarity=0.854 Sum_probs=7.8
Q ss_pred CCCCCCCCHHH
Q ss_conf 00037651011
Q gi|254781023|r 6 RITSGKGDFRE 16 (34)
Q Consensus 6 ritsgkgdfre 16 (34)
-||.|||.+|-
T Consensus 75 vItHGKgHyRv 85 (170)
T d2r7ca1 75 VITHGKGHYRI 85 (170)
T ss_dssp EEECSSSSEEE
T ss_pred EEECCCCEEEE
T ss_conf 99617860899
No 6
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=2.80 E-value=2e+02 Score=12.31 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCHHHHHHCC
Q ss_conf 3100003765101112104
Q gi|254781023|r 3 TQRRITSGKGDFRESATEN 21 (34)
Q Consensus 3 tqrritsgkgdfresaten 21 (34)
|..+-..+.|||.|-..|-
T Consensus 45 TpKpqs~~~gDFeeIPeey 63 (65)
T d4htci_ 45 TPKPESHNNGDFEEIPEEY 63 (65)
T ss_dssp EECCCCCCCCCCCCCCGGG
T ss_pred CCCCCCCCCCCCCCCCHHH
T ss_conf 7587656887755285776
No 7
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.75 E-value=80 Score=14.11 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 37651011121048864246742
Q gi|254781023|r 9 SGKGDFRESATENIPPSIKGKGE 31 (34)
Q Consensus 9 sgkgdfresatenippsikgkge 31 (34)
.+-.|+|||..-.+-..++.+|-
T Consensus 27 ~n~dD~R~Sp~i~ii~~L~~~g~ 49 (108)
T d1dlja3 27 SNSDNFRESAIKDVIDILKSKDI 49 (108)
T ss_dssp TTCSCCTTCHHHHHHHHHHTSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99962433108999999862356
No 8
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=2.35 E-value=1.8e+02 Score=12.53 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=8.3
Q ss_pred CCCCCCCCCHHH
Q ss_conf 000037651011
Q gi|254781023|r 5 RRITSGKGDFRE 16 (34)
Q Consensus 5 rritsgkgdfre 16 (34)
|.+|+|+|.|--
T Consensus 61 rs~T~G~g~~~~ 72 (96)
T d2dy1a5 61 PGLTGGAGAYTL 72 (96)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHCCCCEEEEE
T ss_conf 421898589999
No 9
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
Probab=2.28 E-value=2.4e+02 Score=11.91 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCC
Q ss_conf 731000037651
Q gi|254781023|r 2 KTQRRITSGKGD 13 (34)
Q Consensus 2 ktqrritsgkgd 13 (34)
|.|.||+.|+||
T Consensus 61 k~~~~ivtG~G~ 72 (176)
T d1k28d2 61 SSIPMITTGKGE 72 (176)
T ss_dssp SCCCCCEETTCC
T ss_pred CCCCEEEECCCC
T ss_conf 466279963884
No 10
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=2.28 E-value=2.1e+02 Score=12.19 Aligned_cols=10 Identities=50% Similarity=0.697 Sum_probs=6.2
Q ss_pred CCCCCCCCCC
Q ss_conf 6424674226
Q gi|254781023|r 24 PSIKGKGEMV 33 (34)
Q Consensus 24 psikgkgemv 33 (34)
.|..||.|||
T Consensus 29 eslagkremv 38 (103)
T d3chbd_ 29 ESLAGKREMA 38 (103)
T ss_dssp EECSTTCCEE
T ss_pred HHHCCCEEEE
T ss_conf 8645760699
Done!