BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781023|ref|YP_003065436.1| hypothetical protein CLIBASIA_04625 [Candidatus Liberibacter asiaticus str. psy62] (34 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781023|ref|YP_003065436.1| hypothetical protein CLIBASIA_04625 [Candidatus Liberibacter asiaticus str. psy62] Length = 34 Score = 70.1 bits (170), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 34/34 (100%), Positives = 34/34 (100%) Query: 1 MKTQRRITSGKGDFRESATENIPPSIKGKGEMVG 34 MKTQRRITSGKGDFRESATENIPPSIKGKGEMVG Sbjct: 1 MKTQRRITSGKGDFRESATENIPPSIKGKGEMVG 34 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 19.6 bits (39), Expect = 9.8, Method: Compositional matrix adjust. Identities = 6/10 (60%), Positives = 10/10 (100%) Query: 23 PPSIKGKGEM 32 PP+I+G+GE+ Sbjct: 303 PPNIEGEGEI 312 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.309 0.130 0.357 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,150 Number of Sequences: 1233 Number of extensions: 358 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 34 length of database: 328,796 effective HSP length: 8 effective length of query: 26 effective length of database: 318,932 effective search space: 8292232 effective search space used: 8292232 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 31 (16.5 bits)