HHsearch alignment for GI: 254781024 and conserved domain: COG0665
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].
Probab=99.33 E-value=1.1e-09 Score=86.10 Aligned_cols=303 Identities=22% Similarity=0.198 Sum_probs=143.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-CCCCCCEECHHHH----------H----HHCCCHHH
Q ss_conf 03647799989768999999999808997399997867789-8-6402740333678----------8----86787264
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG-A-HILSGAIIDPIGI----------D----SLLPRWRE 75 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG-~-~i~sG~vl~p~aL----------~----eL~Pd~~e 75 (554)
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~--~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 79 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE 79 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 976439998986999999999997699--199991798876766776777752423555303343379999999999887
Q ss_pred HCCCCCCCEEEEEEEEEECCCC-------------------C---EE-------CCCCCCC---CCCCCCCCEEEEHHHH
Q ss_conf 1488543224366999977997-------------------6---77-------3654356---5446788268888898
Q gi|254781024|r 76 DKGHPFHTVVKRDLYWFLNAQR-------------------S---IQ-------IPHFCLP---DFMDNKEHYIVSLGQV 123 (554)
Q Consensus 76 ~~g~pl~~~v~~d~~~~l~~~~-------------------~---~~-------~p~~~~p---~~~~~~g~yiv~r~~f 123 (554)
T Consensus 80 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~p~~~ 158 (387)
T COG0665 80 ELGTG-AGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLL 158 (387)
T ss_pred HCCCC-CCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHH
T ss_conf 53766-44566242998844674325668999999986021001188878766373337764334598488834578999
Q ss_pred HHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH-HHHHH
Q ss_conf 999999998749-5330682243477627762014541243244346657875630267742578606644325-54211
Q gi|254781024|r 124 CRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL-TRQLI 201 (554)
Q Consensus 124 d~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l-ak~l~ 201 (554)
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~t~~g----------------~~~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG----------------TIEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEEECCC----------------EEECCEEEECCCCCHHHHHHHCC
T ss_conf 9999999997399189723524677614-7-3589995897----------------09819899999964355554235
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCC-CCCCCCHH-
Q ss_conf 2248998888989988988887516566788808995043476876641257664798059999832666-56688988-
Q gi|254781024|r 202 ERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDY-RNPWISAY- 279 (554)
Q Consensus 202 ~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~-~~~~~~~~- 279 (554)
T Consensus 221 -~--~~~~~~p~~---~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 289 (387)
T COG0665 221 -E--LPLPLRPVR---G--QALTTEPP---EGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPERED 289 (387)
T ss_pred -C--CCCCCEEEE---E--EEEEECCC---CCCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCH
T ss_conf -2--344524675---5--69996377---63311234540254058855999888985999740233677776653100
Q ss_pred ----HHHHHHH-HCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCC-----CCCCCCCCCHHHHHHHH
Q ss_conf ----9999986-0800456503882630351340054212487423088799612323-----31366435226899999
Q gi|254781024|r 280 ----EELQRFK-THPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAG-----FVNLLRIKGSHNAIISG 349 (554)
Q Consensus 280 ----~~lq~fk-~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG-----~vnP~~g~GI~~Am~SG 349 (554)
T Consensus 290 ~~~~~l~~~~~~~~p~----l~~~~~~~~w~G~~~--------~t~pd~~P~iG~~~~~~~~~~a~G~~~~G~~~~p~~g 357 (387)
T COG0665 290 LVIAELLRVARALLPG----LADAGIEAAWAGLRP--------PTTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAPALG 357 (387)
T ss_pred HHHHHHHHHHHHHCCC----CCCCCCCEEEEEECC--------CCCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 1599999999985824----245565257888647--------8689988788643898989999788772066728999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781024|r 350 MLAAEKIVE 358 (554)
Q Consensus 350 ~lAAEai~e 358 (554)
T Consensus 358 ~~lA~~i~g 366 (387)
T COG0665 358 RLLADLILG 366 (387)
T ss_pred HHHHHHHCC
T ss_conf 999999749