HHsearch alignment for GI: 254781024 and conserved domain: COG1206
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis].
Probab=96.23 E-value=0.0048 Score=40.04 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC---CCCCC------CCCCCEECHHHHHHHCCCHH-HH--CCCC
Q ss_conf 3647799989768999999999808997399997867---78986------40274033367888678726-41--4885
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA---EVGAH------ILSGAIIDPIGIDSLLPRWR-ED--KGHP 80 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~---~pG~~------i~sG~vl~p~aL~eL~Pd~~-e~--~g~p 80 (554)
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSl 79 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSL 79 (439)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8772589756544519999998769--83799970456689754456524302125546403444457889999972117
Q ss_pred CCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC
Q ss_conf 4322436699997799767736543565446788268888898999999998749
Q gi|254781024|r 81 FHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG 135 (554)
Q Consensus 81 l~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G 135 (554)
T Consensus 80 i-----------i~~Ad~~~VP---------AGgALAVDR~~Fs~~vT~~l~~hp 114 (439)
T COG1206 80 I-----------IEAADKHRVP---------AGGALAVDRDGFSQAVTEKLENHP 114 (439)
T ss_pred H-----------HHHHHHCCCC---------CCCEEEECHHHHHHHHHHHHHCCC
T ss_conf 8-----------6641540688---------876046617677899999985399