HHsearch alignment for GI: 254781024 and conserved domain: COG1635
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism].
Probab=99.72 E-value=2.7e-16 Score=132.11 Aligned_cols=157 Identities=23% Similarity=0.378 Sum_probs=118.0
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHH-----HHHHHCCCHHHHCCCCCCCE
Q ss_conf 0103647799989768999999999808997399997867789864027403336-----78886787264148854322
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPI-----GIDSLLPRWREDKGHPFHTV 84 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~-----aL~eL~Pd~~e~~g~pl~~~ 84 (554)
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL----~e-------- 91 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEIL----DE-------- 91 (262)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH----HH--------
T ss_conf 8754326799876850578999998679--649999730146876334433356044425389999----98--------
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 43669999779976773654356544678826888889899999999874953306822434776277620145412432
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
T Consensus 92 --------------~gI~y-----e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~ 152 (262)
T COG1635 92 --------------FGIRY-----EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTP 152 (262)
T ss_pred --------------HCCCC-----EECCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCH
T ss_conf --------------19852-----44579669832799999999998730810242324778998169946899982512
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 443466578756302677425786066443255421122
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
T Consensus 153 V~~~~----lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 153 VQMAG----LHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHCC----CCCCCCEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 22056----542751124789996788842899999985