HHsearch alignment for GI: 254781024 and conserved domain: KOG0399
>KOG0399 consensus.
Probab=96.86 E-value=0.0016 Score=43.39 Aligned_cols=46 Identities=26% Similarity=0.513 Sum_probs=23.3
Q ss_pred HHCCHHHCCCC-CEEEEEEECCCCEEEEEECCCCCCCCC--C--CCCCCCCCCE
Q ss_conf 41781321358-600688965997056651566670475--7--3006888862
Q gi|254781024|r 491 IYSGPSMRYCP-AGVYEWHQNNDENNYIIHAQNCIHCKA--C--VIKDPNQNIE 539 (554)
Q Consensus 491 ~~~~p~~~~cp-a~vye~~~~~~~~~~~i~~~nc~hckt--c--~ik~p~~~i~ 539 (554)
T Consensus 1656 ~yrdp~~r~ndw~e~~~~~---~~~~~~~qtarcmdcgtpfc~~~~gcpl~n~i 1706 (2142)
T KOG0399 1656 MYRDPKERLNDWKEVYDFE---AVSNLREQTARCMDCGTPFCQSDSGCPLGNII 1706 (2142)
T ss_pred CCCCHHHHCCCHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 0268465313388764110---33156777668753798550578899665656