HHsearch alignment for GI: 254781024 and conserved domain: KOG0399

>KOG0399 consensus.
Probab=96.86  E-value=0.0016  Score=43.39  Aligned_cols=46  Identities=26%  Similarity=0.513  Sum_probs=23.3

Q ss_pred             HHCCHHHCCCC-CEEEEEEECCCCEEEEEECCCCCCCCC--C--CCCCCCCCCE
Q ss_conf             41781321358-600688965997056651566670475--7--3006888862
Q gi|254781024|r  491 IYSGPSMRYCP-AGVYEWHQNNDENNYIIHAQNCIHCKA--C--VIKDPNQNIE  539 (554)
Q Consensus       491 ~~~~p~~~~cp-a~vye~~~~~~~~~~~i~~~nc~hckt--c--~ik~p~~~i~  539 (554)
T Consensus      1656 ~yrdp~~r~ndw~e~~~~~---~~~~~~~qtarcmdcgtpfc~~~~gcpl~n~i 1706 (2142)
T KOG0399        1656 MYRDPKERLNDWKEVYDFE---AVSNLREQTARCMDCGTPFCQSDSGCPLGNII 1706 (2142)
T ss_pred             CCCCHHHHCCCHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             0268465313388764110---33156777668753798550578899665656