HHsearch alignment for GI: 254781024 and conserved domain: KOG0404
>KOG0404 consensus.
Probab=97.98 E-value=5e-05 Score=53.82 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=71.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~--i~pGGQLtTTT~veNfPGF--------------------- 63 (322)
T KOG0404 9 ENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANG--IAPGGQLTTTTDVENFPGF--------------------- 63 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHCC--CCCEEEEEEECCC--CCCCCEEEEEECCCCCCCC---------------------
T ss_conf 03899835806777899976502--6756881111168--6888634565201348999---------------------
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99767736543565446788268888898999999998749533068224347762776201454124324434665787
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKH 174 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~ 174 (554)
T Consensus 64 ------------Pd--------gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~--sskpF~l~td------------- 107 (322)
T KOG0404 64 ------------PD--------GITGPELMDKMRKQSERFGTEIITET-VSKVDL--SSKPFKLWTD------------- 107 (322)
T ss_pred ------------CC--------CCCCHHHHHHHHHHHHHHCCEEEEEE-HHHCCC--CCCCEEEEEC-------------
T ss_conf ------------75--------45668899999988875164654100-222223--6897698843-------------
Q ss_pred CCCEEEEEEEEEEEECCCC
Q ss_conf 5630267742578606644
Q gi|254781024|r 175 YIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 175 ~~~g~~i~Ak~vI~AdG~~ 193 (554)
T Consensus 108 ---~~~v~~~avI~atGAs 123 (322)
T KOG0404 108 ---ARPVTADAVILATGAS 123 (322)
T ss_pred ---CCCEEEEEEEEECCCC
T ss_conf ---7724530699921630