HHsearch alignment for GI: 254781024 and conserved domain: KOG1399
>KOG1399 consensus.
Probab=98.68 E-value=2e-07 Score=70.56 Aligned_cols=141 Identities=23% Similarity=0.299 Sum_probs=82.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CEECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 3647799989768999999999808997399997867789864027----403336788867872641488543224366
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG----AIIDPIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG----~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~s-s~Y~~l------------~tn~--- 66 (448)
T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHS-SVYKSL------------RTNL--- 66 (448)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCEEEECCCCCCCCC-CHHHHH------------HCCC---
T ss_conf 7785489785668889999998779--983699705874545860576565543-243421------------0468---
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC--EECCCCEEEEEEECCC-CCEEEEEECCCCC
Q ss_conf 999977997677365435654467882688888989999999987495--3306822434776277-6201454124324
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGV--EIYCGFTATEIYYGKK-GEALGILTGEKGK 165 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gv--ei~~g~~v~~i~~~e~-g~vvgv~t~~~G~ 165 (554)
T Consensus 67 ------pKe~~~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~--V~~~~~~~ 135 (448)
T KOG1399 67 ------PKEMMGYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR--VTTKDNGT 135 (448)
T ss_pred ------CHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEE--EEEECCCC
T ss_conf ------8444257998975---457111788889999999998735834626734657998405677416--89814886
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 4346657875630267742578606644
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
T Consensus 136 ----------~-~~~~ifd~VvVctGh~ 152 (448)
T KOG1399 136 ----------Q-IEEEIFDAVVVCTGHY 152 (448)
T ss_pred ----------C-EEEEEEEEEEECCCCC
T ss_conf ----------4-0589963899955676