HHsearch alignment for GI: 254781024 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=98.75 E-value=5.5e-08 Score=74.39 Aligned_cols=144 Identities=17% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCC----CCEECHHHHHHHCCCHHHHCCCCCCCE--E
Q ss_conf 364779998976899999999980899739999786-778986402----740333678886787264148854322--4
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHILS----GAIIDPIGIDSLLPRWREDKGHPFHTV--V 85 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~s----G~vl~p~aL~eL~Pd~~e~~g~pl~~~--v 85 (554)
T Consensus 5 ~~yDVIViG~GhAG~EAa~aaar~G--~~t~lit~~~~~ig~m-sCNPsiGGi~KG~lvrEi--d---aLgG~mg~~aD~ 76 (621)
T PRK05192 5 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNLDTIGQM-SCNPAIGGIAKGHLVREI--D---ALGGEMGKAADK 76 (621)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEE-ECCCCCCCCCHHHHHHHH--H---HCCCHHHHHHHH
T ss_conf 8798899897579999999999679--9679996581311586-045203672165766687--7---536899999988
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 366999977997677365435654467882688888989999999987-4953306822434776277620145412432
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
T Consensus 77 ~~Iq~r~LN~sKG--------pAv-~~-~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~-v~~l~~-~~~~v~GV~~~~-- 142 (621)
T PRK05192 77 TGIQFRMLNTSKG--------PAV-RA-PRAQADRKLYRAAMREILENQPNLTLFQGE-VEDLIV-ENDRVKGVVTQD-- 142 (621)
T ss_pred HHHHHHHHCCCCC--------CCC-CC-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEEE-ECCEEEEEEECC--
T ss_conf 7616876158888--------300-67-398885999999999999649997899814-579998-799999999668--
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 443466578756302677425786066
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEG 191 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG 191 (554)
T Consensus 143 -------------g~~i~a~~vvlttG 156 (621)
T PRK05192 143 -------------GLEFRAKAVVLTTG 156 (621)
T ss_pred -------------CEEEEEEEEEEECC
T ss_conf -------------70998526998315