HHsearch alignment for GI: 254781024 and conserved domain: PRK05192

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=98.75  E-value=5.5e-08  Score=74.39  Aligned_cols=144  Identities=17%  Similarity=0.296  Sum_probs=81.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCC----CCEECHHHHHHHCCCHHHHCCCCCCCE--E
Q ss_conf             364779998976899999999980899739999786-778986402----740333678886787264148854322--4
Q gi|254781024|r   13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHILS----GAIIDPIGIDSLLPRWREDKGHPFHTV--V   85 (554)
Q Consensus        13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~s----G~vl~p~aL~eL~Pd~~e~~g~pl~~~--v   85 (554)
T Consensus         5 ~~yDVIViG~GhAG~EAa~aaar~G--~~t~lit~~~~~ig~m-sCNPsiGGi~KG~lvrEi--d---aLgG~mg~~aD~   76 (621)
T PRK05192          5 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNLDTIGQM-SCNPAIGGIAKGHLVREI--D---ALGGEMGKAADK   76 (621)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEE-ECCCCCCCCCHHHHHHHH--H---HCCCHHHHHHHH
T ss_conf             8798899897579999999999679--9679996581311586-045203672165766687--7---536899999988


Q ss_pred             EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf             366999977997677365435654467882688888989999999987-4953306822434776277620145412432
Q gi|254781024|r   86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKG  164 (554)
Q Consensus        86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G  164 (554)
T Consensus        77 ~~Iq~r~LN~sKG--------pAv-~~-~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~-v~~l~~-~~~~v~GV~~~~--  142 (621)
T PRK05192         77 TGIQFRMLNTSKG--------PAV-RA-PRAQADRKLYRAAMREILENQPNLTLFQGE-VEDLIV-ENDRVKGVVTQD--  142 (621)
T ss_pred             HHHHHHHHCCCCC--------CCC-CC-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEEE-ECCEEEEEEECC--
T ss_conf             7616876158888--------300-67-398885999999999999649997899814-579998-799999999668--


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf             443466578756302677425786066
Q gi|254781024|r  165 KNYDGTQGKHYIAPMLLLSKYMLVGEG  191 (554)
Q Consensus       165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG  191 (554)
T Consensus       143 -------------g~~i~a~~vvlttG  156 (621)
T PRK05192        143 -------------GLEFRAKAVVLTTG  156 (621)
T ss_pred             -------------CEEEEEEEEEEECC
T ss_conf             -------------70998526998315