HHsearch alignment for GI: 254781024 and conserved domain: PRK08013
>PRK08013 hypothetical protein; Provisional.
Probab=99.94 E-value=4.4e-23 Score=179.34 Aligned_cols=340 Identities=17% Similarity=0.136 Sum_probs=185.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCCC-CCCCEECHHHHHHH--CCCHHHH---CCCCCCC
Q ss_conf 64779998976899999999980899739999786778----9864-02740333678886--7872641---4885432
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV----GAHI-LSGAIIDPIGIDSL--LPRWRED---KGHPFHT 83 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p----G~~i-~sG~vl~p~aL~eL--~Pd~~e~---~g~pl~~ 83 (554)
T Consensus 3 ~~DV~IvGaGpvGl~lA~~La~~G--~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~-- 78 (400)
T PRK08013 3 SVDVAIVGGGMVGLAVACGLQGSG--LRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCY-- 78 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCC--
T ss_conf 678899993599999999997189--9589991899876778888770444008999999998798076686067761--
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 243669999779976773654356544678826888889899999999874-9533068224347762776201454124
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
T Consensus 79 --~~~~v~~~~~~g~~~~~~~--~~~-~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v--~l~- 150 (400)
T PRK08013 79 --HGMEVWDKDSFGHISFDDQ--SMG-YSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFL--TLK- 150 (400)
T ss_pred --EEEEEECCCCCCEEECCCC--CCC-CCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEE--EEC-
T ss_conf --1579863787752432620--138-75230430208899999999986898299868668998716971599--947-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
T Consensus 151 --------------~g~~i~a~lvVgADG~~S~vR~~~gi~~~~~~y--~q~~l-----v~~v~~~~~~~~~a~q~f--- 206 (400)
T PRK08013 151 --------------DGSMLTARLVIGADGANSWLRNKADIPLTFWDY--QHHAL-----VATIRTEEPHDAVARQVF--- 206 (400)
T ss_pred --------------CCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCC--CCEEE-----EEEECCCCCCCCCCEEEE---
T ss_conf --------------998997428999788761323313888723377--85399-----984125676656416764---
Q ss_pred CCCCCCCCEEEEECCC-CEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 7687664125766479-8059999832666566--889889999986080045650388263035134005421248742
Q gi|254781024|r 243 LDMNTSGGGFVYHFDD-NLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d-~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
T Consensus 207 --~~~-G~la~LPl~~~~~~~~vw~~~~~~~~~~~~~~~-~~~~~~l~~-~~~~~lg~~~~~~-~~~~~pl~~~-~a~~~ 279 (400)
T PRK08013 207 --HGE-GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPE-EEFNRALNI-AFDNRLGLCKLES-ERQVFPLTGR-YARQF 279 (400)
T ss_pred --CCC-CCEEEEECCCCCEEEEEEECCHHHHHHHHHCCH-HHHHHHHHH-HHHHCCCCEEEEE-CCEEEEHHHE-EEHHH
T ss_conf --499-757999779998799999558789999985359-999999987-6200056408974-2347434450-10233
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3088799612323313664352268999999999999998745886-53--03678998642046678887422566887
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-HD--DPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~~--~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
T Consensus 280 ~~~rv~LiGDAAH~~hP~aGQGlNlgi~Da~~L~~~L~~~~~~~~d~g~~~~L~~Ye~~R~~-~~~~~~~~t~~l~~~f~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKH-SAALMLAGMQGFRDLFA 358 (400)
T ss_pred CCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 27755773225541796212636267999999999999998548897768999999999899-99999999999999987
Q ss_pred H
Q ss_conf 6
Q gi|254781024|r 397 R 397 (554)
Q Consensus 397 ~ 397 (554)
T Consensus 359 ~ 359 (400)
T PRK08013 359 G 359 (400)
T ss_pred C
T ss_conf 9