HHsearch alignment for GI: 254781024 and conserved domain: PRK12409

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional.
Probab=99.56  E-value=4.6e-12  Score=102.71  Aligned_cols=208  Identities=15%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             EEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-
Q ss_conf             6888889899999999874953306822434776277620145412432443466578756302677425786066443-
Q gi|254781024|r  116 YIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG-  194 (554)
Q Consensus       116 yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s-  194 (554)
T Consensus       192 ~~~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~------------~~~~~~ad~vViAaGawS~  259 (410)
T PRK12409        192 STGDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQG------------DSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCC------------CCCEEEEEEEEECCCCCCH
T ss_conf             0635899999999999977999987855899998099899996464233------------5525883049987666637


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf             25542112248998888989988988887516566788808995043476876641257664798059999832666566
Q gi|254781024|r  195 SLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP  274 (554)
Q Consensus       195 ~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~  274 (554)
T Consensus       260 ~L~~~lG~~~Pl~p~rG---y~l~----~~~~~~~~~~~~p~~~----~~-~~~~~~~~~~~g~~~lrv~gt~E~~g~d~  327 (410)
T PRK12409        260 QLAAMLGDRVNVYPVKG---YSIT----VNLDDEASRAAAPWVS----LL-DESAKIVTSRLGADRFRVAGTAEFNGYNR  327 (410)
T ss_pred             HHHHHCCCCCCEEECCC---EEEE----EECCCCCCCCCCCEEE----EE-CCCCEEEEEECCCCEEEECCCEEECCCCC
T ss_conf             66865388652364267---5899----8558754334687278----97-27966998625798489626402258889


Q ss_pred             CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC--CCC-CCCC-CCCCHHHHHHHHH
Q ss_conf             88988999998608004565038826303513400542124874230887996123--233-1366-4352268999999
Q gi|254781024|r  275 WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA--AGF-VNLL-RIKGSHNAIISGM  350 (554)
Q Consensus       275 ~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA--AG~-vnP~-~g~GI~~Am~SG~  350 (554)
T Consensus       328 ~~~~~-~~~~l~~~--a~~~~P~l~~~~----~~~---W~G~RP~tpD~lPvIG~~~~~gl~~a~GH~~~G~~lap~tg~  397 (410)
T PRK12409        328 DIRAD-RIRPLVDW--VRRNFPGVSTRR----VVP---WAGLRPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATAD  397 (410)
T ss_pred             CCCHH-HHHHHHHH--HHHHCCCCCCCC----CEE---EEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             98989-99999999--999788977266----506---254506899988982878999999997881257789999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781024|r  351 LAAEKIV  357 (554)
Q Consensus       351 lAAEai~  357 (554)
T Consensus       398 lvA~li~  404 (410)
T PRK12409        398 LVAQVVQ  404 (410)
T ss_pred             HHHHHHC
T ss_conf             9999975