HHsearch alignment for GI: 254781024 and conserved domain: PRK12409
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional.
Probab=99.56 E-value=4.6e-12 Score=102.71 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred EEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-
Q ss_conf 6888889899999999874953306822434776277620145412432443466578756302677425786066443-
Q gi|254781024|r 116 YIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG- 194 (554)
Q Consensus 116 yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s- 194 (554)
T Consensus 192 ~~~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~------------~~~~~~ad~vViAaGawS~ 259 (410)
T PRK12409 192 STGDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQG------------DSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCC------------CCCEEEEEEEEECCCCCCH
T ss_conf 0635899999999999977999987855899998099899996464233------------5525883049987666637
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 25542112248998888989988988887516566788808995043476876641257664798059999832666566
Q gi|254781024|r 195 SLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP 274 (554)
Q Consensus 195 ~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~ 274 (554)
T Consensus 260 ~L~~~lG~~~Pl~p~rG---y~l~----~~~~~~~~~~~~p~~~----~~-~~~~~~~~~~~g~~~lrv~gt~E~~g~d~ 327 (410)
T PRK12409 260 QLAAMLGDRVNVYPVKG---YSIT----VNLDDEASRAAAPWVS----LL-DESAKIVTSRLGADRFRVAGTAEFNGYNR 327 (410)
T ss_pred HHHHHCCCCCCEEECCC---EEEE----EECCCCCCCCCCCEEE----EE-CCCCEEEEEECCCCEEEECCCEEECCCCC
T ss_conf 66865388652364267---5899----8558754334687278----97-27966998625798489626402258889
Q ss_pred CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC--CCC-CCCC-CCCCHHHHHHHHH
Q ss_conf 88988999998608004565038826303513400542124874230887996123--233-1366-4352268999999
Q gi|254781024|r 275 WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA--AGF-VNLL-RIKGSHNAIISGM 350 (554)
Q Consensus 275 ~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA--AG~-vnP~-~g~GI~~Am~SG~ 350 (554)
T Consensus 328 ~~~~~-~~~~l~~~--a~~~~P~l~~~~----~~~---W~G~RP~tpD~lPvIG~~~~~gl~~a~GH~~~G~~lap~tg~ 397 (410)
T PRK12409 328 DIRAD-RIRPLVDW--VRRNFPGVSTRR----VVP---WAGLRPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATAD 397 (410)
T ss_pred CCCHH-HHHHHHHH--HHHHCCCCCCCC----CEE---EEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 98989-99999999--999788977266----506---254506899988982878999999997881257789999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781024|r 351 LAAEKIV 357 (554)
Q Consensus 351 lAAEai~ 357 (554)
T Consensus 398 lvA~li~ 404 (410)
T PRK12409 398 LVAQVVQ 404 (410)
T ss_pred HHHHHHC
T ss_conf 9999975