HHsearch alignment for GI: 254781024 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.24 E-value=0.033 Score=34.26 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHCCC-CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 01036-47799989768999999999808997399997867789864027403336788867872641488543224366
Q gi|254781024|r 10 KDVFE-YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 10 re~me-yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
T Consensus 303 ~I~akGK~VvvIGGGDTG~DCvGTs~RhGA-~sV~qFE~mP~P-----------P--------~---------~------ 347 (517)
T TIGR01317 303 FIKAKGKKVVVIGGGDTGADCVGTSLRHGA-ASVHQFEIMPKP-----------P--------E---------E------ 347 (517)
T ss_pred CEEECCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHCCCCCCC-----------C--------H---------H------
T ss_conf 354228678997578756224563235543-552302568887-----------7--------6---------7------
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECC-CCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 9999779976773654356544678826888889899999999874953306-822434776277620145412432443
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYC-GFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~-g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
T Consensus 348 ------Ra~~npWP~w--P~v~-----------r~~y~hEE~~a~~GrDpRey~i~t~~f~G~d~G~V~a~rTv~V~~~K 408 (517)
T TIGR01317 348 ------RAKDNPWPEW--PKVY-----------RVDYAHEEVKAKYGRDPREYSIATKEFVGDDEGKVKAVRTVRVEMKK 408 (517)
T ss_pred ------HCCCCCCCCC--CCEE-----------EECHHHHHHHHCCCCCCHHHHCCCEEEEECCCCEEEEEEEEEEEEEE
T ss_conf ------7278648657--5113-----------30266898985179560123100133567688448788889999987